Variant report

Variant	rs7824500
Chromosome Location	chr8:105647880-105647881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:105647711..105650674-chr8:105669105..105672035,2	K562	blood:
2	chr8:105647273..105649368-chr8:105675042..105676589,2	K562	blood:
3	chr8:105632918..105635015-chr8:105646007..105648866,2	K562	blood:

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10505062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10955352	0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs10955357	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775166	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775331	0.86[EUR][1000 genomes]
rs11776230	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11777528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[EUR][1000 genomes]
rs11781863	0.83[EUR][1000 genomes]
rs11782169	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782366	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782889	0.89[AMR][1000 genomes]
rs11783063	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783104	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783651	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs11784193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs11786825	0.90[CEU][hapmap]
rs11989936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[EUR][1000 genomes]
rs11996303	0.89[AMR][1000 genomes]
rs12675273	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675605	0.84[EUR][1000 genomes]
rs12676758	0.84[EUR][1000 genomes]
rs12677524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs12677793	0.86[EUR][1000 genomes]
rs12678904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12678962	0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs12680652	0.81[EUR][1000 genomes]
rs12681898	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13249169	1.00[JPT][hapmap]
rs13250948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs13254058	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254678	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257283	0.86[EUR][1000 genomes]
rs13260018	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13262954	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264598	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs13265309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265320	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13266739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs13268122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268597	0.84[AFR][1000 genomes]
rs13270263	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13279448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs1438355	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871500	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap]
rs1837203	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28481880	0.81[AFR][1000 genomes]
rs2880074	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3018438	0.88[ASW][hapmap];0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs33999897	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34008887	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34145689	0.81[EUR][1000 genomes]
rs34155810	0.81[EUR][1000 genomes]
rs34155867	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34255383	0.80[EUR][1000 genomes]
rs34306176	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34340810	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34493777	0.81[EUR][1000 genomes]
rs34556973	0.83[EUR][1000 genomes]
rs34690452	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34873943	0.81[EUR][1000 genomes]
rs34881302	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34971735	0.86[EUR][1000 genomes]
rs35013911	0.81[EUR][1000 genomes]
rs35085883	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35140929	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35258168	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35263244	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35328383	0.84[AFR][1000 genomes]
rs35379160	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35394104	0.86[EUR][1000 genomes]
rs35465370	0.85[AFR][1000 genomes]
rs35467682	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35517423	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35635659	0.91[EUR][1000 genomes]
rs35649342	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35767747	0.81[EUR][1000 genomes]
rs35795037	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236775	0.85[AFR][1000 genomes]
rs4263729	0.88[ASW][hapmap];0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs4288345	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4552868	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4593510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4734803	0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes]
rs59294667	0.82[AFR][1000 genomes]
rs6468939	1.00[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes]
rs66494641	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67089516	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67555988	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6984152	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6990243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs6993149	0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes]
rs6994764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs6995010	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004507	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7009594	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010576	0.84[AFR][1000 genomes]
rs71520891	0.81[EUR][1000 genomes]
rs71520892	0.80[EUR][1000 genomes]
rs71520893	0.81[EUR][1000 genomes]
rs71520897	0.81[EUR][1000 genomes]
rs71520900	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520901	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731126	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7465442	0.85[AFR][1000 genomes]
rs7815871	0.87[AFR][1000 genomes]
rs7821181	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7823671	0.88[ASW][hapmap];0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.81[YRI][hapmap]
rs7834086	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7842204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.80[EUR][1000 genomes]
rs7845137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[EUR][1000 genomes]
rs9694676	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105645400-105648200	Enhancers	Fetal Thymus	thymus
2	chr8:105646800-105650800	Weak transcription	K562	blood
3	chr8:105647400-105651400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr8:105647400-105652600	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links