Variant report

Variant	rs7834086
Chromosome Location	chr8:105595748-105595749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105594673..105597308-chr8:105598908..105601422,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147650	Chromatin interaction

Extended variants
information (count: 129 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10505060	0.80[YRI][hapmap]
rs10505062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808392	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955352	0.83[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes]
rs10955357	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11775166	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11775331	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776230	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11777528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779233	0.82[ASN][1000 genomes]
rs11781863	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11782169	0.83[EUR][1000 genomes]
rs11782889	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783063	0.86[EUR][1000 genomes]
rs11783104	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11783651	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785071	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11786825	0.90[CEU][hapmap]
rs11787202	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11989936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11996303	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675273	0.86[EUR][1000 genomes]
rs12675605	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12676758	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12677524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12677793	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678962	0.83[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes]
rs12680652	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681898	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12682004	0.82[ASN][1000 genomes]
rs13249169	1.00[JPT][hapmap]
rs13250948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254678	0.84[AMR][1000 genomes]
rs13259268	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13262954	0.86[EUR][1000 genomes]
rs13264598	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs13265309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs13266321	0.84[AFR][1000 genomes]
rs13266739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13268122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs13268597	0.88[AFR][1000 genomes]
rs13270263	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13279448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1438355	0.88[AMR][1000 genomes]
rs16871500	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16871526	0.80[YRI][hapmap]
rs1837203	0.86[EUR][1000 genomes]
rs28481880	0.81[AFR][1000 genomes]
rs2880074	0.86[EUR][1000 genomes]
rs3018438	0.88[ASW][hapmap];0.83[CEU][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs33999897	0.86[EUR][1000 genomes]
rs34008887	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34145689	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34155810	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34155867	0.86[EUR][1000 genomes]
rs34255383	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34299626	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34306176	0.86[EUR][1000 genomes]
rs34435802	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34493777	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34556973	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34695252	0.84[EUR][1000 genomes]
rs34873943	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34881302	0.86[EUR][1000 genomes]
rs34971735	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35013911	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35140929	0.86[EUR][1000 genomes]
rs35263244	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35328383	0.88[AFR][1000 genomes]
rs35349928	0.82[ASN][1000 genomes]
rs35379160	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35394104	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35465370	0.83[AFR][1000 genomes]
rs35467682	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35517423	0.83[EUR][1000 genomes]
rs35635659	0.83[EUR][1000 genomes]
rs35649342	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35767747	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35795037	0.86[EUR][1000 genomes]
rs4236775	0.84[AFR][1000 genomes]
rs4263729	0.88[ASW][hapmap];0.83[CEU][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes]
rs4288345	0.86[EUR][1000 genomes]
rs4338071	0.93[AFR][1000 genomes]
rs4552868	0.86[EUR][1000 genomes]
rs4593510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4623378	0.80[YRI][hapmap]
rs4734803	0.83[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs59294667	0.87[AFR][1000 genomes]
rs6468939	1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs66494641	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67089516	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67555988	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67712332	0.86[AFR][1000 genomes]
rs6984152	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6990243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6993149	0.83[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs6994764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs6995010	0.83[EUR][1000 genomes]
rs7004507	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009594	0.86[EUR][1000 genomes]
rs7010576	0.83[AFR][1000 genomes]
rs71520889	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71520891	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71520892	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71520893	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520897	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520900	0.86[EUR][1000 genomes]
rs71520901	0.86[EUR][1000 genomes]
rs731126	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7465442	0.84[AFR][1000 genomes]
rs7813587	0.80[YRI][hapmap]
rs7815209	0.80[YRI][hapmap]
rs7815871	0.85[AFR][1000 genomes]
rs7819498	0.80[YRI][hapmap]
rs7821181	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7823671	0.88[ASW][hapmap];0.83[CEU][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.86[MEX][hapmap];0.97[MKK][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes]
rs7824500	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7838928	0.80[YRI][hapmap]
rs7842204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7845137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9694676	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv508522	chr8:105532034-105614403	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7834086	LRP12	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105581600-105598600	Weak transcription	Osteobl	bone
2	chr8:105584200-105600000	Weak transcription	Aorta	Aorta
3	chr8:105584600-105598000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:105588400-105598000	Weak transcription	Fetal Heart	heart
5	chr8:105592000-105598000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:105592400-105597800	Weak transcription	Fetal Brain Male	brain
7	chr8:105593400-105597800	Enhancers	Dnd41	blood
8	chr8:105594000-105596000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr8:105594000-105596800	Weak transcription	A549	lung
10	chr8:105594000-105597600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:105594800-105598200	Active TSS	GM12878-XiMat	blood
12	chr8:105595200-105595800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:105595200-105596000	Enhancers	Right Ventricle	heart
14	chr8:105595200-105596000	ZNF genes & repeats	K562	blood
15	chr8:105595400-105596800	Weak transcription	Fetal Brain Female	brain
16	chr8:105595400-105597200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:105595600-105595800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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