Variant report

Variant	rs13262954
Chromosome Location	chr8:105635722-105635723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:105633597..105636250-chr8:105676084..105679408,5	K562	blood:
2	chr8:105599846..105602604-chr8:105634861..105636951,3	K562	blood:
3	chr8:105627700..105631260-chr8:105632105..105636974,7	K562	blood:
4	chr8:105598989..105604538-chr8:105634527..105638518,5	K562	blood:

Variant related genes	Relation type
ENSG00000253350	Chromatin interaction
ENSG00000147650	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10505062	0.86[EUR][1000 genomes]
rs10955357	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775166	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775331	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11776230	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11777528	0.82[EUR][1000 genomes]
rs11781863	0.84[EUR][1000 genomes]
rs11782169	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782366	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782889	0.81[EUR][1000 genomes]
rs11783063	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783104	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783651	0.86[EUR][1000 genomes]
rs11784193	0.86[EUR][1000 genomes]
rs11785071	0.84[EUR][1000 genomes]
rs11787202	0.84[EUR][1000 genomes]
rs11989936	0.82[EUR][1000 genomes]
rs12675273	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675605	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12676758	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12677524	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12677793	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12678904	0.86[EUR][1000 genomes]
rs12680652	0.86[EUR][1000 genomes]
rs12681898	0.86[EUR][1000 genomes]
rs13250005	0.82[EUR][1000 genomes]
rs13250948	0.86[EUR][1000 genomes]
rs13254058	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254678	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257283	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13260018	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265320	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13266739	0.86[EUR][1000 genomes]
rs13268122	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13270263	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13279448	0.86[EUR][1000 genomes]
rs1438355	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871500	0.80[EUR][1000 genomes]
rs1837203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2880074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33999897	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34008887	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34145689	0.86[EUR][1000 genomes]
rs34155810	0.86[EUR][1000 genomes]
rs34155867	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34255383	0.82[EUR][1000 genomes]
rs34299626	0.84[EUR][1000 genomes]
rs34306176	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34340810	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34435802	0.84[EUR][1000 genomes]
rs34493777	0.86[EUR][1000 genomes]
rs34556973	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34690452	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34695252	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34873943	0.86[EUR][1000 genomes]
rs34881302	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34971735	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35013911	0.86[EUR][1000 genomes]
rs35085883	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35140929	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35258168	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35263244	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35379160	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35394104	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35467682	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35517423	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35635659	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35649342	0.86[EUR][1000 genomes]
rs35767747	0.86[EUR][1000 genomes]
rs35795037	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4288345	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4552868	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4593510	0.86[EUR][1000 genomes]
rs66494641	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67089516	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67555988	0.88[EUR][1000 genomes]
rs6984152	0.83[EUR][1000 genomes]
rs6990243	0.86[EUR][1000 genomes]
rs6994764	0.86[EUR][1000 genomes]
rs6995010	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004507	0.86[EUR][1000 genomes]
rs7009594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520889	0.84[EUR][1000 genomes]
rs71520891	0.86[EUR][1000 genomes]
rs71520892	0.82[EUR][1000 genomes]
rs71520893	0.86[EUR][1000 genomes]
rs71520897	0.86[EUR][1000 genomes]
rs71520900	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731126	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821181	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7824500	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834086	0.86[EUR][1000 genomes]
rs7842204	0.82[EUR][1000 genomes]
rs7845137	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105634000-105635800	Flanking Active TSS	K562	blood
2	chr8:105634000-105636400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:105634200-105636400	Enhancers	Primary hematopoietic stem cells	blood
4	chr8:105634400-105635800	Flanking Active TSS	Dnd41	blood
5	chr8:105634400-105635800	Flanking Active TSS	GM12878-XiMat	blood
6	chr8:105634400-105636800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:105634600-105635800	Enhancers	Primary T cells from cord blood	blood
8	chr8:105634600-105636000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:105634800-105635800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:105635400-105636800	Enhancers	Fetal Thymus	thymus
11	chr8:105635600-105635800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr8:105635600-105635800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr8:105635600-105636600	Enhancers	Thymus	Thymus

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