Variant report

Variant	rs35085883
Chromosome Location	chr8:105656828-105656829
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105631528..105633607-chr8:105655825..105657917,2	K562	blood:
2	chr8:105596815..105598399-chr8:105654955..105657445,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10955357	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775166	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775331	0.81[EUR][1000 genomes]
rs11776230	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782169	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782366	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783063	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783104	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675273	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675605	0.81[AMR][1000 genomes]
rs12676758	0.81[AMR][1000 genomes]
rs12677524	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12677793	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13254058	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254678	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13257283	0.81[EUR][1000 genomes]
rs13260018	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13262954	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265309	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265320	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268122	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13270263	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1438355	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837203	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2880074	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33999897	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34008887	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34155867	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34306176	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34340810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34556973	0.82[AMR][1000 genomes]
rs34690452	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34695252	0.81[AMR][1000 genomes]
rs34881302	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34971735	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35140929	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35258168	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35263244	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35379160	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35394104	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35467682	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35517423	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35635659	0.86[EUR][1000 genomes]
rs35795037	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4288345	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4552868	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66494641	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67089516	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6995010	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009594	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520900	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520901	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs731126	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821181	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7824500	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105652600-105660800	Weak transcription	Dnd41	blood
2	chr8:105654600-105657000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:105655000-105657200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:105655200-105657200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:105655400-105657600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:105655600-105657200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:105655600-105657200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:105655600-105658000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr8:105655800-105657000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:105655800-105657200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr8:105656200-105657400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr8:105656400-105657000	Enhancers	NHDF-Ad	bronchial
13	chr8:105656400-105660800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:105656400-105660800	Weak transcription	HSMM	muscle
15	chr8:105656400-105660800	Weak transcription	K562	blood
16	chr8:105656400-105661000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:105656400-105661000	Weak transcription	HSMMtube	muscle
18	chr8:105656600-105660800	Weak transcription	Osteobl	bone
19	chr8:105656800-105661000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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