Variant report

Variant	rs13257283
Chromosome Location	chr8:105608497-105608498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:105607303..105609924-chr8:105610357..105613113,2	MCF-7	breast:
2	chr8:105607424..105610207-chr8:105615952..105617508,2	K562	blood:
3	chr8:105600125..105603799-chr8:105604638..105608804,4	MCF-7	breast:
4	chr8:105543714..105545305-chr8:105608007..105609799,2	K562	blood:
5	chr8:105528612..105531312-chr8:105607615..105609704,2	K562	blood:
6	chr8:105603605..105610207-chr8:105613658..105617508,6	K562	blood:

Variant related genes	Relation type
ENSG00000147650	Chromatin interaction
ENSG00000253350	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10955357	0.83[EUR][1000 genomes]
rs11775166	0.86[EUR][1000 genomes]
rs11775331	0.82[EUR][1000 genomes]
rs11776230	0.89[EUR][1000 genomes]
rs11780996	1.00[ASN][1000 genomes]
rs11782169	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11782366	0.81[EUR][1000 genomes]
rs11783063	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11783104	0.89[EUR][1000 genomes]
rs11786825	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675273	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12675605	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12676758	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12677524	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12677793	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13254058	0.81[EUR][1000 genomes]
rs13254678	0.81[EUR][1000 genomes]
rs13260018	0.81[EUR][1000 genomes]
rs13262954	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13265309	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13265320	0.81[EUR][1000 genomes]
rs13268122	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13270263	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17245950	1.00[ASN][1000 genomes]
rs17834440	1.00[ASN][1000 genomes]
rs1837203	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2880074	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs33999897	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34008887	0.86[EUR][1000 genomes]
rs34155867	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34306176	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34340810	0.81[EUR][1000 genomes]
rs34690452	0.81[EUR][1000 genomes]
rs34695252	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34881302	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34971735	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35085883	0.81[EUR][1000 genomes]
rs35140929	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35258168	0.81[EUR][1000 genomes]
rs35263244	0.89[EUR][1000 genomes]
rs35379160	0.86[EUR][1000 genomes]
rs35394104	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35467682	0.86[EUR][1000 genomes]
rs35517423	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35635659	0.88[EUR][1000 genomes]
rs35795037	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35907176	1.00[ASN][1000 genomes]
rs4288345	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4552868	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66466609	1.00[ASN][1000 genomes]
rs66494641	0.83[EUR][1000 genomes]
rs67089516	0.86[EUR][1000 genomes]
rs6995010	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7009594	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71520886	1.00[ASN][1000 genomes]
rs71520900	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71520901	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs731126	0.86[EUR][1000 genomes]
rs7821181	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7824500	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv508522	chr8:105532034-105614403	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105608000-105613000	Weak transcription	Dnd41	blood
2	chr8:105608200-105609800	Weak transcription	K562	blood

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