Variant report

Variant	rs11782889
Chromosome Location	chr8:105569758-105569759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10505062	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808392	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955352	0.93[AFR][1000 genomes]
rs10955357	0.93[AMR][1000 genomes]
rs11775166	0.93[AMR][1000 genomes]
rs11775331	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776230	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11777528	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779233	0.82[ASN][1000 genomes]
rs11781863	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11783063	0.81[EUR][1000 genomes]
rs11783104	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11783651	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784193	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785071	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11787202	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11989936	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11996303	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675273	0.81[EUR][1000 genomes]
rs12675605	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12676758	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12677524	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12677793	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678904	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678962	0.93[AFR][1000 genomes]
rs12680652	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12681898	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12682004	0.82[ASN][1000 genomes]
rs13250948	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254678	0.85[AMR][1000 genomes]
rs13259268	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13262954	0.81[EUR][1000 genomes]
rs13265309	0.81[EUR][1000 genomes]
rs13266321	0.83[AFR][1000 genomes]
rs13266739	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13268122	0.81[EUR][1000 genomes]
rs13268597	0.88[AFR][1000 genomes]
rs13270263	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13279448	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1438355	0.89[AMR][1000 genomes]
rs16871500	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1837203	0.81[EUR][1000 genomes]
rs2880074	0.81[EUR][1000 genomes]
rs3018438	0.82[AFR][1000 genomes]
rs33999897	0.81[EUR][1000 genomes]
rs34008887	0.93[AMR][1000 genomes]
rs34145689	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34155810	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34155867	0.81[EUR][1000 genomes]
rs34255383	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34299626	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34306176	0.81[EUR][1000 genomes]
rs34435802	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34493777	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34556973	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34695252	0.82[EUR][1000 genomes]
rs34873943	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34881302	0.81[EUR][1000 genomes]
rs34971735	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35013911	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35140929	0.81[EUR][1000 genomes]
rs35263244	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35328383	0.88[AFR][1000 genomes]
rs35349928	0.82[ASN][1000 genomes]
rs35379160	0.93[AMR][1000 genomes]
rs35394104	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35465370	0.82[AFR][1000 genomes]
rs35467682	0.93[AMR][1000 genomes]
rs35649342	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35767747	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35795037	0.81[EUR][1000 genomes]
rs4236775	0.83[AFR][1000 genomes]
rs4263729	0.95[AFR][1000 genomes]
rs4288345	0.81[EUR][1000 genomes]
rs4338071	0.95[AFR][1000 genomes]
rs4552868	0.81[EUR][1000 genomes]
rs4593510	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734803	0.84[AFR][1000 genomes]
rs59294667	0.86[AFR][1000 genomes]
rs6468939	0.86[AFR][1000 genomes]
rs66494641	0.93[AMR][1000 genomes]
rs67089516	0.93[AMR][1000 genomes]
rs67555988	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67712332	0.85[AFR][1000 genomes]
rs6984152	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6990243	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6993149	0.84[AFR][1000 genomes]
rs6994764	0.84[EUR][1000 genomes]
rs7004507	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009594	0.81[EUR][1000 genomes]
rs7010576	0.82[AFR][1000 genomes]
rs71520889	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71520891	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71520892	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71520893	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520897	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71520900	0.81[EUR][1000 genomes]
rs71520901	0.81[EUR][1000 genomes]
rs731126	0.85[AMR][1000 genomes]
rs7465442	0.83[AFR][1000 genomes]
rs7815871	0.84[AFR][1000 genomes]
rs7821181	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7823671	0.91[AFR][1000 genomes]
rs7824500	0.89[AMR][1000 genomes]
rs7834086	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842204	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7845137	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9694676	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv508522	chr8:105532034-105614403	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105557400-105583800	Weak transcription	Thymus	Thymus
2	chr8:105566000-105575800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:105566200-105573000	Weak transcription	K562	blood
4	chr8:105566200-105587200	Weak transcription	Left Ventricle	heart
5	chr8:105566400-105583400	Weak transcription	Fetal Thymus	thymus
6	chr8:105569200-105570800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:105569200-105570800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:105569400-105570200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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