Variant report

Variant	rs11789033
Chromosome Location	chr9:96135680-96135681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10761210	0.90[CHB][hapmap]
rs10761216	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10761217	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821109	0.89[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap]
rs10821118	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992701	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs10992711	0.81[ASN][1000 genomes]
rs10992713	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12235484	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2086105	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2841680	0.94[CEU][hapmap]
rs2841681	0.95[CEU][hapmap]
rs3933798	0.89[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.90[YRI][hapmap]
rs7041850	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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