Variant report

Variant	rs12235484
Chromosome Location	chr9:96125526-96125527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10761210	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs10761211	0.81[ASN][1000 genomes]
rs10761216	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821109	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.82[ASN][1000 genomes]
rs10821118	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992701	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs10992708	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10992709	0.84[ASN][1000 genomes]
rs10992711	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10992713	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11521661	0.82[ASN][1000 genomes]
rs11789033	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12685091	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2086105	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2841680	0.94[CEU][hapmap]
rs2841681	0.95[CEU][hapmap]
rs2991377	0.85[CHB][hapmap]
rs2991384	0.84[ASN][1000 genomes]
rs2995995	0.82[ASN][1000 genomes]
rs2995997	0.86[CHB][hapmap]
rs2995998	0.85[CHB][hapmap]
rs3933798	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs62574460	0.82[ASN][1000 genomes]
rs7041850	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7042763	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2761278	chr9:96115678-96126104	ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96109200-96127800	Weak transcription	Right Atrium	heart
2	chr9:96120200-96125600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:96121200-96126200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr9:96124200-96127800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:96124400-96126800	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:96124400-96128400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:96124800-96126800	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:96125000-96125600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:96125000-96126800	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:96125000-96127800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr9:96125000-96127800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:96125000-96129200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links