Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96102610..96104810-chr9:96126925..96128745,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10761210	0.95[CHB][hapmap]
rs10761216	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761217	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821109	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10821118	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10992701	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs10992708	0.83[ASN][1000 genomes]
rs10992709	0.83[ASN][1000 genomes]
rs10992711	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10992713	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11521661	0.81[ASN][1000 genomes]
rs11789033	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12235484	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685091	0.83[ASN][1000 genomes]
rs2086105	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2841680	0.94[CEU][hapmap]
rs2841681	0.95[CEU][hapmap]
rs2991377	0.85[CHB][hapmap]
rs2991384	0.83[ASN][1000 genomes]
rs2995995	0.80[ASN][1000 genomes]
rs2995997	0.85[CHB][hapmap]
rs2995998	0.85[CHB][hapmap]
rs3933798	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs62574460	0.80[ASN][1000 genomes]
rs7042763	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96125000-96129200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:96126800-96128800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:96126800-96129200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr9:96126800-96130400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:96127800-96128600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr9:96127800-96128800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:96127800-96129400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:96127800-96129400	Strong transcription	Right Atrium	heart
9	chr9:96128200-96128800	Bivalent/Poised TSS	HepG2	liver
10	chr9:96128400-96128600	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr9:96128400-96129000	Enhancers	H9 Cell Line	embryonic stem cell

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