Variant report

Variant	rs11789285
Chromosome Location	chr9:94646570-94646571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94633023..94637402-chr9:94642921..94647325,4	MCF-7	breast:
2	chr9:94631930..94633777-chr9:94645726..94647722,2	K562	blood:
3	chr9:94645315..94647676-chr9:94666839..94670309,3	K562	blood:
4	chr9:94640107..94642644-chr9:94644861..94647641,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11787708	0.90[JPT][hapmap]
rs11788348	0.81[JPT][hapmap]
rs11788423	0.90[JPT][hapmap]
rs11790201	0.90[JPT][hapmap]
rs11790345	0.90[JPT][hapmap]
rs11790808	0.81[JPT][hapmap]
rs11791415	0.90[JPT][hapmap]
rs11792667	0.90[JPT][hapmap]
rs11793320	0.88[JPT][hapmap]
rs11794240	0.81[JPT][hapmap]
rs11794532	0.90[JPT][hapmap]
rs11795340	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1569141	0.81[JPT][hapmap]
rs16907863	0.81[JPT][hapmap]
rs16907923	0.90[JPT][hapmap]
rs7026615	0.90[JPT][hapmap]
rs7032536	0.81[JPT][hapmap]
rs7045662	0.90[JPT][hapmap]
rs7853161	0.90[JPT][hapmap]
rs7874281	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94627000-94650800	Weak transcription	Gastric	stomach
2	chr9:94627200-94648600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:94627600-94647400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:94636600-94647200	Weak transcription	Fetal Intestine Large	intestine
5	chr9:94639800-94647400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:94643200-94650400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:94643400-94648600	Weak transcription	Pancreas	Pancrea
8	chr9:94644400-94650800	Weak transcription	Right Atrium	heart
9	chr9:94644800-94647600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:94645200-94646600	Weak transcription	Fetal Stomach	stomach
11	chr9:94645200-94647200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:94645400-94646600	Enhancers	Fetal Heart	heart
13	chr9:94645400-94648600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr9:94645400-94648800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:94645800-94647600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr9:94646000-94646600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:94646000-94648400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr9:94646000-94648800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:94646000-94649800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:94646000-94651600	Enhancers	K562	blood
21	chr9:94646000-94652600	Enhancers	Ovary	ovary
22	chr9:94646000-94654800	Enhancers	Fetal Lung	lung
23	chr9:94646200-94647600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
24	chr9:94646200-94648200	Enhancers	HepG2	liver
25	chr9:94646200-94648400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr9:94646200-94650800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr9:94646400-94646600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
28	chr9:94646400-94646600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
29	chr9:94646400-94646600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr9:94646400-94647000	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr9:94646400-94647600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
32	chr9:94646400-94648000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr9:94646400-94648000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr9:94646400-94648000	Enhancers	Colon Smooth Muscle	Colon
35	chr9:94646400-94648000	Enhancers	Fetal Intestine Small	intestine
36	chr9:94646400-94648400	Enhancers	H9 Cell Line	embryonic stem cell

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