Variant report

Variant	rs11795340
Chromosome Location	chr9:94642377-94642378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94640107..94642644-chr9:94644861..94647641,2	K562	blood:
2	chr9:94641817..94643317-chr9:94650910..94653000,2	K562	blood:
3	chr9:94634801..94638279-chr9:94639316..94642885,4	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11787708	0.89[JPT][hapmap]
rs11788348	0.89[JPT][hapmap]
rs11788423	0.89[JPT][hapmap]
rs11789285	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11790201	0.89[JPT][hapmap]
rs11790345	0.89[JPT][hapmap]
rs11790808	0.89[JPT][hapmap]
rs11791415	0.89[JPT][hapmap]
rs11792667	0.89[JPT][hapmap]
rs11793320	0.86[JPT][hapmap]
rs11793706	1.00[AFR][1000 genomes]
rs11794240	0.89[JPT][hapmap]
rs11794532	0.89[JPT][hapmap]
rs1569141	0.89[JPT][hapmap]
rs16907863	0.89[JPT][hapmap]
rs16907923	0.89[JPT][hapmap]
rs17516460	0.91[AMR][1000 genomes]
rs2049705	0.88[JPT][hapmap]
rs2141369	1.00[AFR][1000 genomes]
rs35783050	1.00[AFR][1000 genomes]
rs36034285	1.00[AFR][1000 genomes]
rs3858082	0.88[JPT][hapmap]
rs59845812	0.91[AMR][1000 genomes]
rs59903414	0.91[AMR][1000 genomes]
rs7026615	0.89[JPT][hapmap]
rs7032536	0.89[JPT][hapmap]
rs7032998	0.88[JPT][hapmap]
rs7045662	0.89[JPT][hapmap]
rs7048052	0.88[JPT][hapmap]
rs7853161	0.89[JPT][hapmap]
rs7853430	0.91[AMR][1000 genomes]
rs7866188	0.88[JPT][hapmap]
rs7873326	0.86[JPT][hapmap]
rs7874281	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94627000-94650800	Weak transcription	Gastric	stomach
2	chr9:94627200-94648600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:94627600-94647400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:94633000-94644600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:94636600-94642800	Weak transcription	Left Ventricle	heart
6	chr9:94636600-94646000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:94636600-94647200	Weak transcription	Fetal Intestine Large	intestine
8	chr9:94636800-94645400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:94637800-94645000	Weak transcription	Fetal Intestine Small	intestine
10	chr9:94638000-94643200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:94638200-94643000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:94638200-94643000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:94638200-94646200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:94638400-94646000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr9:94638800-94644200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr9:94639200-94645200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:94639400-94645000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:94639800-94644000	Weak transcription	Right Atrium	heart
19	chr9:94639800-94647400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr9:94640400-94642600	Weak transcription	Fetal Heart	heart
21	chr9:94640400-94645200	Strong transcription	Fetal Stomach	stomach
22	chr9:94641000-94643000	Weak transcription	Fetal Lung	lung
23	chr9:94641400-94643200	Enhancers	Ovary	ovary
24	chr9:94641600-94644400	Genic enhancers	K562	blood
25	chr9:94641800-94643600	Enhancers	Colon Smooth Muscle	Colon
26	chr9:94641800-94644800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:94642000-94643800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links