Variant report

Variant	rs36034285
Chromosome Location	chr9:94608406-94608407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94599805..94602377-chr9:94607458..94609463,2	K562	blood:
2	chr9:94549725..94552292-chr9:94608057..94610041,2	K562	blood:
3	chr9:94597584..94599500-chr9:94607793..94610758,2	K562	blood:
4	chr9:94600587..94602440-chr9:94606824..94609770,3	K562	blood:
5	chr9:94602829..94605124-chr9:94607630..94609855,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11787708	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11788348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11788423	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11788545	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11789408	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790201	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790345	0.92[ASN][1000 genomes]
rs11790808	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11791415	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11792593	0.98[ASN][1000 genomes]
rs11792667	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11792818	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11793320	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11793706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11794240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11794532	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11795340	1.00[AFR][1000 genomes]
rs1569141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16907863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16907923	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2141369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35783050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57464764	1.00[ASN][1000 genomes]
rs57944742	1.00[ASN][1000 genomes]
rs58089833	0.98[ASN][1000 genomes]
rs59646330	1.00[ASN][1000 genomes]
rs61199056	0.92[ASN][1000 genomes]
rs7026615	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7032536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7045662	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73517062	1.00[ASN][1000 genomes]
rs73517065	0.98[ASN][1000 genomes]
rs73517077	0.92[ASN][1000 genomes]
rs73517083	0.92[ASN][1000 genomes]
rs73517090	0.92[ASN][1000 genomes]
rs73517091	0.92[ASN][1000 genomes]
rs73517094	0.92[ASN][1000 genomes]
rs7853161	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7867837	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871170	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874281	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
7	nsv6614	chr9:94571349-94610085	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94594600-94610800	Enhancers	Fetal Thymus	thymus
2	chr9:94601800-94618400	Weak transcription	K562	blood
3	chr9:94602800-94611200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:94602800-94611600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:94604800-94610200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:94605600-94609600	Weak transcription	Spleen	Spleen
7	chr9:94606400-94609000	Enhancers	Fetal Heart	heart
8	chr9:94606600-94609800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr9:94606600-94616600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:94606800-94609200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr9:94606800-94609200	Weak transcription	Fetal Kidney	kidney
12	chr9:94606800-94609600	Weak transcription	Primary T cells from cord blood	blood
13	chr9:94606800-94609600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:94606800-94609800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:94606800-94609800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr9:94606800-94615000	Weak transcription	Right Atrium	heart
17	chr9:94606800-94619600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr9:94607000-94609600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:94607000-94609600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr9:94607000-94609800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr9:94607000-94609800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr9:94607000-94609800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr9:94607000-94610200	Weak transcription	Fetal Brain Male	brain
24	chr9:94607200-94610000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:94607200-94610200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:94607200-94619600	Weak transcription	Fetal Intestine Large	intestine
27	chr9:94607400-94609600	Weak transcription	NHLF	lung
28	chr9:94607600-94608600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr9:94607600-94609200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:94607600-94609400	Weak transcription	Fetal Muscle Leg	muscle
31	chr9:94607600-94609600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr9:94607600-94609800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr9:94607600-94619600	Weak transcription	Fetal Intestine Small	intestine
34	chr9:94607800-94609200	Weak transcription	Colon Smooth Muscle	Colon
35	chr9:94607800-94609600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr9:94607800-94609600	Weak transcription	Fetal Lung	lung
37	chr9:94607800-94609800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr9:94607800-94609800	Weak transcription	Ovary	ovary
39	chr9:94607800-94609800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr9:94608000-94609600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr9:94608200-94610200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:94608400-94608600	Enhancers	Placenta	Placenta
43	chr9:94608400-94609200	Weak transcription	Fetal Stomach	stomach
44	chr9:94608400-94609400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr9:94608400-94609600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr9:94608400-94619000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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