Variant report

Variant	rs73517077
Chromosome Location	chr9:94628300-94628301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94626467..94629171-chr9:94633400..94634901,2	K562	blood:
2	chr9:94619022..94622671-chr9:94625624..94629747,5	K562	blood:
3	chr9:94626758..94629803-chr9:94629808..94631771,3	K562	blood:
4	chr9:94626760..94629171-chr9:94633039..94635717,3	K562	blood:
5	chr9:94614773..94616690-chr9:94628132..94630664,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11787708	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11788423	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788545	0.81[ASN][1000 genomes]
rs11789408	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11790201	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11790345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791415	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11792371	0.86[ASN][1000 genomes]
rs11792593	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11792667	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792818	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793320	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793706	0.88[ASN][1000 genomes]
rs11794240	0.80[ASN][1000 genomes]
rs11794532	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907863	0.88[ASN][1000 genomes]
rs16907923	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2141369	0.92[ASN][1000 genomes]
rs35783050	0.92[ASN][1000 genomes]
rs36034285	0.92[ASN][1000 genomes]
rs57464764	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57944742	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58089833	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58978642	0.94[AFR][1000 genomes]
rs59646330	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61199056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7026615	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7045662	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73517062	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73517065	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73517083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73517089	0.94[AFR][1000 genomes]
rs73517090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73517091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73517094	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73519106	0.92[AFR][1000 genomes]
rs73519110	0.88[AFR][1000 genomes]
rs73519111	0.85[AFR][1000 genomes]
rs7853161	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867837	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7871170	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7874281	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94621400-94638000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:94623200-94629000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:94623200-94634000	Weak transcription	Fetal Intestine Small	intestine
4	chr9:94626000-94628400	Enhancers	Fetal Lung	lung
5	chr9:94626000-94628600	Enhancers	Colon Smooth Muscle	Colon
6	chr9:94626400-94628400	Enhancers	Stomach Smooth Muscle	stomach
7	chr9:94626400-94628800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:94626600-94630400	Enhancers	K562	blood
9	chr9:94626600-94636200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:94627000-94632600	Weak transcription	Right Atrium	heart
11	chr9:94627000-94635000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:94627000-94650800	Weak transcription	Gastric	stomach
13	chr9:94627200-94648600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr9:94627600-94629600	Weak transcription	Ovary	ovary
15	chr9:94627600-94647400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:94627800-94630600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:94628000-94629800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:94628000-94635400	Weak transcription	Fetal Heart	heart
19	chr9:94628200-94629400	Weak transcription	Fetal Stomach	stomach

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