Variant report

Variant	rs7871170
Chromosome Location	chr9:94618456-94618457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94602912..94604839-chr9:94617568..94620449,2	MCF-7	breast:
2	chr9:94611262..94612833-chr9:94616740..94619706,2	K562	blood:
3	chr9:94611333..94613687-chr9:94618206..94620128,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11787708	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11788348	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11788423	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11788545	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11789408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790345	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11790808	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11791415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792371	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11792593	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11792667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11792818	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11793320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11793706	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11794240	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11794532	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1569141	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16907863	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16907923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2141369	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35783050	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36034285	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57464764	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57944742	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58089833	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59646330	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61199056	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7026615	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7032536	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7045662	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73517062	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73517065	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73517077	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73517083	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73517090	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73517091	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73517094	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7853161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7867837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874281	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94606800-94619600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:94607200-94619600	Weak transcription	Fetal Intestine Large	intestine
3	chr9:94607600-94619600	Weak transcription	Fetal Intestine Small	intestine
4	chr9:94608400-94619000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:94610200-94619000	Weak transcription	Ovary	ovary
6	chr9:94610400-94618600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:94610600-94618800	Weak transcription	Fetal Kidney	kidney
8	chr9:94611400-94619000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:94615200-94621000	Enhancers	Fetal Heart	heart
10	chr9:94616000-94620400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:94616400-94621400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:94616600-94618800	Weak transcription	Right Atrium	heart
13	chr9:94616800-94619600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr9:94616800-94621400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:94617000-94618800	Weak transcription	Fetal Lung	lung
16	chr9:94617400-94618600	Enhancers	Stomach Smooth Muscle	stomach
17	chr9:94617400-94621400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:94617600-94618800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:94617600-94621400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:94617600-94621400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:94617800-94621200	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr9:94617800-94621400	Enhancers	Colon Smooth Muscle	Colon
23	chr9:94617800-94621400	Enhancers	Rectal Smooth Muscle	rectum
24	chr9:94618000-94618600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr9:94618000-94618800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:94618000-94618800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:94618000-94618800	Weak transcription	Fetal Stomach	stomach
28	chr9:94618000-94619000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr9:94618000-94619600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr9:94618000-94620400	Weak transcription	Esophagus	oesophagus
31	chr9:94618000-94620400	Weak transcription	Spleen	Spleen
32	chr9:94618000-94621200	Enhancers	Fetal Thymus	thymus
33	chr9:94618400-94619800	Enhancers	K562	blood

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