Variant report

Variant	rs73517065
Chromosome Location	chr9:94623583-94623584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11787708	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11788423	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11788545	0.87[ASN][1000 genomes]
rs11789408	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11790201	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11790345	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11791415	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11792371	0.92[ASN][1000 genomes]
rs11792593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792667	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11792818	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11793320	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11793706	0.94[ASN][1000 genomes]
rs11794240	0.86[ASN][1000 genomes]
rs11794532	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16907863	0.94[ASN][1000 genomes]
rs16907923	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2141369	0.98[ASN][1000 genomes]
rs35783050	0.98[ASN][1000 genomes]
rs36034285	0.98[ASN][1000 genomes]
rs4641128	0.81[AFR][1000 genomes]
rs57464764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57944742	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58089833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58978642	0.88[AFR][1000 genomes]
rs59646330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61199056	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7026615	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7045662	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73517062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73517077	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73517083	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73517089	0.88[AFR][1000 genomes]
rs73517090	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73517091	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73517094	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73519106	0.86[AFR][1000 genomes]
rs73519110	0.83[AFR][1000 genomes]
rs7853161	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7867837	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7871170	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7874281	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
7	esv3487565	chr9:94622342-94626802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3487566	chr9:94622342-94626802	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94620800-94626400	Weak transcription	Ovary	ovary
2	chr9:94621000-94626400	Weak transcription	Fetal Heart	heart
3	chr9:94621000-94627400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:94621200-94626000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:94621200-94626600	Weak transcription	Fetal Thymus	thymus
6	chr9:94621400-94623600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:94621400-94624600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:94621400-94625400	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:94621400-94626000	Weak transcription	Fetal Lung	lung
10	chr9:94621400-94626400	Weak transcription	Gastric	stomach
11	chr9:94621400-94626400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:94621400-94626600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:94621400-94626600	Weak transcription	K562	blood
14	chr9:94621400-94626800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr9:94621400-94627000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:94621400-94638000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:94622000-94626400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:94623000-94626000	Weak transcription	Fetal Stomach	stomach
19	chr9:94623000-94626400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:94623200-94623600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr9:94623200-94626400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:94623200-94627000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:94623200-94629000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:94623200-94634000	Weak transcription	Fetal Intestine Small	intestine
25	chr9:94623400-94623800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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