Variant report

Variant	rs11787708
Chromosome Location	chr9:94638095-94638096
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94634801..94638279-chr9:94639316..94642885,4	K562	blood:
2	chr9:94636703..94639887-chr9:94643001..94646217,3	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11788348	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes]
rs11788423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11788545	0.87[AMR][1000 genomes]
rs11789285	0.90[JPT][hapmap]
rs11789408	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11790201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11790345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11790808	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes]
rs11791415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11792371	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11792593	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11792667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11792818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11793320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11793706	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11794240	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes]
rs11794532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11795340	0.89[JPT][hapmap]
rs1569141	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes]
rs16907863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs16907923	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2141369	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35783050	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs36034285	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57464764	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57944742	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58089833	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59646330	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61199056	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7026615	1.00[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7032536	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes]
rs7045662	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73517062	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73517065	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73517077	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73517083	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73517090	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73517091	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73517094	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7853161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7867837	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7871170	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7874281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1036176	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv540171	chr9:94500213-94639367	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
6	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94627000-94650800	Weak transcription	Gastric	stomach
2	chr9:94627200-94648600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:94627600-94647400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:94630400-94641400	Weak transcription	K562	blood
5	chr9:94631200-94639400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:94632800-94641000	Enhancers	Colon Smooth Muscle	Colon
7	chr9:94633000-94644600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:94634600-94638200	Enhancers	Rectal Smooth Muscle	rectum
9	chr9:94636200-94638200	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr9:94636200-94641800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:94636400-94638800	Enhancers	Ovary	ovary
12	chr9:94636400-94639800	Enhancers	Stomach Smooth Muscle	stomach
13	chr9:94636600-94639200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:94636600-94639200	Weak transcription	Right Atrium	heart
15	chr9:94636600-94639800	Weak transcription	Fetal Heart	heart
16	chr9:94636600-94642800	Weak transcription	Left Ventricle	heart
17	chr9:94636600-94646000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:94636600-94647200	Weak transcription	Fetal Intestine Large	intestine
19	chr9:94636800-94645400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:94637000-94640400	Weak transcription	Fetal Stomach	stomach
21	chr9:94637600-94638200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr9:94637600-94638200	Enhancers	Fetal Lung	lung
23	chr9:94637800-94638200	Enhancers	Fetal Muscle Leg	muscle
24	chr9:94637800-94639200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr9:94637800-94645000	Weak transcription	Fetal Intestine Small	intestine
26	chr9:94638000-94638200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr9:94638000-94638400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:94638000-94639000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr9:94638000-94643200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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