Variant report

Variant	rs11792293
Chromosome Location	chr9:19047112-19047113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:19047048..19050954-chr9:19228997..19232024,5	K562	blood:
2	chr9:19044018..19047294-chr9:19047672..19049656,4	K562	blood:
3	chr9:19032362..19034123-chr9:19046838..19049376,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155875	Chromatin interaction
ENSG00000155876	Chromatin interaction
ENSG00000137145	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11787990	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11788085	0.82[EUR][1000 genomes]
rs11788588	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11788977	0.87[EUR][1000 genomes]
rs11789469	0.87[EUR][1000 genomes]
rs11790182	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11791226	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11791674	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11791698	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11793687	0.83[EUR][1000 genomes]
rs11795205	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11795374	0.83[EUR][1000 genomes]
rs16937284	0.82[EUR][1000 genomes]
rs17236531	0.82[EUR][1000 genomes]
rs35004770	0.83[EUR][1000 genomes]
rs41269003	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs41269015	1.00[AFR][1000 genomes]
rs41303687	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs41316035	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62563562	0.82[EUR][1000 genomes]
rs72696432	0.85[EUR][1000 genomes]
rs72696433	0.82[EUR][1000 genomes]
rs72696445	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs72696446	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs72696447	0.98[EUR][1000 genomes]
rs72696449	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs72696450	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72696453	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72696455	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72696456	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72696458	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72696459	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72696462	0.87[EUR][1000 genomes]
rs72696463	0.87[EUR][1000 genomes]
rs72696465	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72696469	0.87[EUR][1000 genomes]
rs72696470	0.87[EUR][1000 genomes]
rs72696479	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72696480	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72696481	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72696482	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72696485	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72696487	1.00[AFR][1000 genomes]
rs72696488	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72696489	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72696491	0.83[EUR][1000 genomes]
rs72696494	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72696499	1.00[AFR][1000 genomes]
rs72696500	1.00[AFR][1000 genomes]
rs72696501	1.00[AFR][1000 genomes]
rs72696502	1.00[AFR][1000 genomes]
rs72698303	1.00[AFR][1000 genomes]
rs72698305	1.00[AFR][1000 genomes]
rs72698306	1.00[AFR][1000 genomes]
rs72698310	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
2	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
3	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv973452	chr9:19033958-19053096	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
5	nsv1028623	chr9:19034742-19394712	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
6	nsv540079	chr9:19034742-19394712	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:19037200-19048400	Weak transcription	Stomach Mucosa	stomach
2	chr9:19043600-19048400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:19046200-19048600	Weak transcription	Right Atrium	heart
4	chr9:19047000-19048600	Weak transcription	Psoas Muscle	Psoas

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