Variant report
Variant | rs72696432 |
---|---|
Chromosome Location | chr9:19026532-19026533 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:10)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:10 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | EP300 | chr9:19026410-19026637 | GM12878 | blood: | n/a | chr9:19026510-19026523 |
2 | EGR1 | chr9:19026399-19026583 | GM12878 | blood: | n/a | chr9:19026505-19026519 chr9:19026508-19026521 |
3 | BATF | chr9:19026350-19026693 | GM12878 | blood: | n/a | n/a |
4 | RUNX3 | chr9:19026280-19026763 | GM12878 | blood: | n/a | n/a |
5 | RUNX3 | chr9:19026325-19026733 | GM12878 | blood: | n/a | n/a |
6 | IRF4 | chr9:19026392-19026742 | GM12878 | blood: | n/a | n/a |
7 | BCL11A | chr9:19026385-19026616 | GM12878 | blood: | n/a | n/a |
8 | BATF | chr9:19026413-19026665 | GM12878 | blood: | n/a | n/a |
9 | IKZF1 | chr9:19026477-19026668 | GM12878 | blood: | n/a | n/a |
10 | NFIC | chr9:19026361-19026733 | GM12878 | blood: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000236680 | TF binding region |
rs_ID | r2[population] |
---|---|
rs11787990 | 0.90[EUR][1000 genomes] |
rs11788085 | 0.96[EUR][1000 genomes] |
rs11788588 | 0.90[EUR][1000 genomes] |
rs11788977 | 0.94[EUR][1000 genomes] |
rs11789009 | 0.83[EUR][1000 genomes] |
rs11789032 | 0.83[EUR][1000 genomes] |
rs11789049 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs11789469 | 0.94[EUR][1000 genomes] |
rs11790182 | 0.90[EUR][1000 genomes] |
rs11791226 | 0.94[EUR][1000 genomes] |
rs11791674 | 0.94[EUR][1000 genomes] |
rs11792293 | 0.85[EUR][1000 genomes] |
rs11792398 | 0.90[EUR][1000 genomes] |
rs11793687 | 0.90[EUR][1000 genomes] |
rs11795205 | 0.92[EUR][1000 genomes] |
rs11795374 | 0.90[EUR][1000 genomes] |
rs16937266 | 0.90[EUR][1000 genomes] |
rs16937284 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs17236531 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs34387057 | 0.90[EUR][1000 genomes] |
rs35004770 | 0.90[EUR][1000 genomes] |
rs41269003 | 0.94[EUR][1000 genomes] |
rs41303687 | 0.94[EUR][1000 genomes] |
rs41316035 | 0.94[EUR][1000 genomes] |
rs62560402 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs62560403 | 0.87[EUR][1000 genomes] |
rs62560426 | 0.90[EUR][1000 genomes] |
rs62560427 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs62560428 | 0.90[EUR][1000 genomes] |
rs62560429 | 0.90[EUR][1000 genomes] |
rs62560431 | 0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs62563562 | 0.96[EUR][1000 genomes] |
rs67844957 | 0.90[EUR][1000 genomes] |
rs72696420 | 0.89[EUR][1000 genomes] |
rs72696433 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs72696445 | 0.83[EUR][1000 genomes] |
rs72696446 | 0.83[EUR][1000 genomes] |
rs72696447 | 0.83[EUR][1000 genomes] |
rs72696449 | 0.83[EUR][1000 genomes] |
rs72696450 | 0.94[EUR][1000 genomes] |
rs72696453 | 0.94[EUR][1000 genomes] |
rs72696455 | 0.94[EUR][1000 genomes] |
rs72696456 | 0.94[EUR][1000 genomes] |
rs72696458 | 0.94[EUR][1000 genomes] |
rs72696459 | 0.94[EUR][1000 genomes] |
rs72696462 | 0.94[EUR][1000 genomes] |
rs72696463 | 0.94[EUR][1000 genomes] |
rs72696465 | 0.94[EUR][1000 genomes] |
rs72696469 | 0.94[EUR][1000 genomes] |
rs72696470 | 0.94[EUR][1000 genomes] |
rs72696479 | 0.90[EUR][1000 genomes] |
rs72696480 | 0.90[EUR][1000 genomes] |
rs72696481 | 0.90[EUR][1000 genomes] |
rs72696482 | 0.90[EUR][1000 genomes] |
rs72696485 | 0.90[EUR][1000 genomes] |
rs72696487 | 0.84[EUR][1000 genomes] |
rs72696488 | 0.90[EUR][1000 genomes] |
rs72696489 | 0.90[EUR][1000 genomes] |
rs72696491 | 0.90[EUR][1000 genomes] |
rs72696494 | 0.90[EUR][1000 genomes] |
rs7874465 | 0.87[EUR][1000 genomes] |
rs7874964 | 0.87[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv892692 | chr9:18519699-19045502 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
2 | nsv1017820 | chr9:18882219-19587377 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 94 gene(s) | inside rSNPs | diseases |
3 | nsv540078 | chr9:18882219-19587377 | Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 94 gene(s) | inside rSNPs | diseases |
4 | nsv892700 | chr9:18979441-19156784 | Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
5 | nsv892701 | chr9:18999837-19032907 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:19024200-19028600 | Weak transcription | Fetal Lung | lung |
2 | chr9:19025600-19027000 | Enhancers | Osteobl | bone |
3 | chr9:19025800-19028600 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
4 | chr9:19026200-19026800 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
5 | chr9:19026400-19027000 | Enhancers | GM12878-XiMat | blood |