Variant report
Variant | rs62560431 |
---|---|
Chromosome Location | chr9:19012750-19012751 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11787990 | 0.83[EUR][1000 genomes] |
rs11788085 | 0.89[EUR][1000 genomes] |
rs11788588 | 0.83[EUR][1000 genomes] |
rs11788977 | 0.86[EUR][1000 genomes] |
rs11789009 | 0.91[EUR][1000 genomes] |
rs11789032 | 0.91[EUR][1000 genomes] |
rs11789049 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs11789469 | 0.86[EUR][1000 genomes] |
rs11790182 | 0.83[EUR][1000 genomes] |
rs11791226 | 0.86[EUR][1000 genomes] |
rs11791674 | 0.86[EUR][1000 genomes] |
rs11792398 | 0.98[EUR][1000 genomes] |
rs11793687 | 0.83[EUR][1000 genomes] |
rs11795205 | 0.85[EUR][1000 genomes] |
rs11795374 | 0.83[EUR][1000 genomes] |
rs16937266 | 0.98[EUR][1000 genomes] |
rs16937284 | 0.89[EUR][1000 genomes] |
rs17236531 | 0.89[EUR][1000 genomes] |
rs34387057 | 0.98[EUR][1000 genomes] |
rs35004770 | 0.83[EUR][1000 genomes] |
rs41269003 | 0.86[EUR][1000 genomes] |
rs41303687 | 0.86[EUR][1000 genomes] |
rs41316035 | 0.86[EUR][1000 genomes] |
rs62560402 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs62560403 | 0.94[EUR][1000 genomes] |
rs62560426 | 0.98[EUR][1000 genomes] |
rs62560427 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62560428 | 0.98[EUR][1000 genomes] |
rs62560429 | 0.98[EUR][1000 genomes] |
rs62563562 | 0.89[EUR][1000 genomes] |
rs67844957 | 0.98[EUR][1000 genomes] |
rs7033607 | 0.80[EUR][1000 genomes] |
rs72696420 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs72696432 | 0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs72696433 | 0.89[EUR][1000 genomes] |
rs72696450 | 0.86[EUR][1000 genomes] |
rs72696453 | 0.86[EUR][1000 genomes] |
rs72696455 | 0.86[EUR][1000 genomes] |
rs72696456 | 0.86[EUR][1000 genomes] |
rs72696458 | 0.86[EUR][1000 genomes] |
rs72696459 | 0.86[EUR][1000 genomes] |
rs72696462 | 0.86[EUR][1000 genomes] |
rs72696463 | 0.86[EUR][1000 genomes] |
rs72696465 | 0.86[EUR][1000 genomes] |
rs72696469 | 0.86[EUR][1000 genomes] |
rs72696470 | 0.86[EUR][1000 genomes] |
rs72696479 | 0.83[EUR][1000 genomes] |
rs72696480 | 0.83[EUR][1000 genomes] |
rs72696481 | 0.83[EUR][1000 genomes] |
rs72696482 | 0.83[EUR][1000 genomes] |
rs72696485 | 0.83[EUR][1000 genomes] |
rs72696488 | 0.83[EUR][1000 genomes] |
rs72696489 | 0.83[EUR][1000 genomes] |
rs72696491 | 0.83[EUR][1000 genomes] |
rs72696494 | 0.83[EUR][1000 genomes] |
rs7874465 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs7874964 | 0.94[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv892692 | chr9:18519699-19045502 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
2 | nsv1017820 | chr9:18882219-19587377 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 94 gene(s) | inside rSNPs | diseases |
3 | nsv540078 | chr9:18882219-19587377 | Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 94 gene(s) | inside rSNPs | diseases |
4 | nsv892699 | chr9:18945868-19025693 | Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | nsv892700 | chr9:18979441-19156784 | Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
6 | nsv892701 | chr9:18999837-19032907 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:19010000-19013000 | Weak transcription | Fetal Muscle Leg | muscle |
2 | chr9:19012400-19013400 | Enhancers | Fetal Stomach | stomach |
3 | chr9:19012400-19013400 | Enhancers | Fetal Thymus | thymus |