Variant report

Variant	rs11788085
Chromosome Location	chr9:19034602-19034603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11787990	0.86[EUR][1000 genomes]
rs11788588	0.86[EUR][1000 genomes]
rs11788977	0.90[EUR][1000 genomes]
rs11789049	0.87[EUR][1000 genomes]
rs11789469	0.90[EUR][1000 genomes]
rs11790182	0.86[EUR][1000 genomes]
rs11791226	0.90[EUR][1000 genomes]
rs11791674	0.90[EUR][1000 genomes]
rs11792026	1.00[CEU][hapmap]
rs11792293	0.82[EUR][1000 genomes]
rs11792398	0.87[EUR][1000 genomes]
rs11793687	0.86[EUR][1000 genomes]
rs11795205	0.88[EUR][1000 genomes]
rs11795374	0.86[EUR][1000 genomes]
rs16937266	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16937284	1.00[CEU][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17236531	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34387057	0.87[EUR][1000 genomes]
rs35004770	0.86[EUR][1000 genomes]
rs41269003	0.90[EUR][1000 genomes]
rs41303687	0.90[EUR][1000 genomes]
rs41316035	0.90[EUR][1000 genomes]
rs62560402	0.83[EUR][1000 genomes]
rs62560403	0.83[EUR][1000 genomes]
rs62560426	0.87[EUR][1000 genomes]
rs62560427	0.89[EUR][1000 genomes]
rs62560428	0.87[EUR][1000 genomes]
rs62560429	0.87[EUR][1000 genomes]
rs62560431	0.89[EUR][1000 genomes]
rs62563562	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67844957	0.87[EUR][1000 genomes]
rs72696420	0.85[EUR][1000 genomes]
rs72696432	0.96[EUR][1000 genomes]
rs72696433	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72696450	0.90[EUR][1000 genomes]
rs72696453	0.90[EUR][1000 genomes]
rs72696455	0.90[EUR][1000 genomes]
rs72696456	0.90[EUR][1000 genomes]
rs72696458	0.90[EUR][1000 genomes]
rs72696459	0.90[EUR][1000 genomes]
rs72696462	0.90[EUR][1000 genomes]
rs72696463	0.90[EUR][1000 genomes]
rs72696465	0.90[EUR][1000 genomes]
rs72696469	0.90[EUR][1000 genomes]
rs72696470	0.90[EUR][1000 genomes]
rs72696479	0.86[EUR][1000 genomes]
rs72696480	0.86[EUR][1000 genomes]
rs72696481	0.86[EUR][1000 genomes]
rs72696482	0.86[EUR][1000 genomes]
rs72696485	0.86[EUR][1000 genomes]
rs72696487	0.81[EUR][1000 genomes]
rs72696488	0.86[EUR][1000 genomes]
rs72696489	0.86[EUR][1000 genomes]
rs72696491	0.86[EUR][1000 genomes]
rs72696494	0.86[EUR][1000 genomes]
rs7874465	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7874964	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
3	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
4	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv973452	chr9:19033958-19053096	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:19033800-19036400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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