Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10889665	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889667	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889668	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1358748	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358749	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1884443	0.93[EUR][1000 genomes]
rs2064691	0.91[EUR][1000 genomes]
rs2180296	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2863203	0.95[EUR][1000 genomes]
rs4655521	0.87[EUR][1000 genomes]
rs4655522	0.87[EUR][1000 genomes]
rs4655681	0.94[EUR][1000 genomes]
rs4655688	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655689	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655690	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6666144	0.91[EUR][1000 genomes]
rs6683455	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6684024	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687620	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6703475	0.91[EUR][1000 genomes]
rs7518757	0.86[EUR][1000 genomes]
rs7540900	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461751	chr1:67479598-67689036	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv546445	chr1:67479598-67689036	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67654000-67655800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr1:67654400-67655800	Weak transcription	K562	blood
3	chr1:67655400-67657600	Enhancers	GM12878-XiMat	blood

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