Variant report

Variant	rs7540900
Chromosome Location	chr1:67597295-67597296
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67596003..67598773-chr1:67600680..67602340,2	K562	blood:
2	chr1:67595628..67598773-chr1:67600680..67602546,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10127763	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs10889665	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10889667	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs10889668	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs11801083	0.88[EUR][1000 genomes]
rs12069782	0.82[EUR][1000 genomes]
rs12090164	0.82[EUR][1000 genomes]
rs12095536	0.81[EUR][1000 genomes]
rs1321156	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs1358748	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1358749	0.92[EUR][1000 genomes]
rs1884443	0.91[EUR][1000 genomes]
rs2064691	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2180296	0.93[EUR][1000 genomes]
rs2863203	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3762318	0.85[GIH][hapmap];0.80[TSI][hapmap];0.85[EUR][1000 genomes]
rs4655521	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655522	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655681	0.92[EUR][1000 genomes]
rs4655688	0.91[CEU][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs4655689	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs4655690	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs6588244	1.00[ASN][1000 genomes]
rs6588247	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6666144	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6683455	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes]
rs6684024	0.92[EUR][1000 genomes]
rs6687620	0.91[CEU][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs6703475	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7518757	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461751	chr1:67479598-67689036	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv546445	chr1:67479598-67689036	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv461762	chr1:67551209-67648460	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv546446	chr1:67551209-67648460	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv870950	chr1:67575549-67627260	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67585400-67600400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:67592600-67598600	Weak transcription	K562	blood
3	chr1:67592600-67600200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:67593200-67598400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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