Variant report

Variant	rs1321156
Chromosome Location	chr1:67604702-67604703
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10127763	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs10889665	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs10889667	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10889668	0.91[CEU][hapmap]
rs1358748	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4655688	0.91[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap]
rs4655689	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs4655690	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs6588247	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6683455	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap]
rs6687620	0.91[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs7540900	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461751	chr1:67479598-67689036	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv546445	chr1:67479598-67689036	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv461762	chr1:67551209-67648460	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv546446	chr1:67551209-67648460	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv870950	chr1:67575549-67627260	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67600800-67606200	Enhancers	Fetal Intestine Large	intestine
2	chr1:67600800-67607400	Weak transcription	Colonic Mucosa	Colon
3	chr1:67601000-67606000	Enhancers	Fetal Intestine Small	intestine
4	chr1:67601000-67607400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr1:67601200-67606800	Weak transcription	Primary T cells from cord blood	blood
6	chr1:67602800-67605800	Enhancers	Duodenum Mucosa	Duodenum
7	chr1:67602800-67605800	Enhancers	K562	blood
8	chr1:67602800-67606200	Enhancers	Stomach Mucosa	stomach
9	chr1:67603400-67605400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:67603400-67605600	Weak transcription	Gastric	stomach
11	chr1:67603400-67605600	Weak transcription	Pancreas	Pancrea
12	chr1:67603400-67609000	Weak transcription	Small Intestine	intestine
13	chr1:67604000-67605800	Enhancers	HepG2	liver
14	chr1:67604400-67605400	Active TSS	Rectal Mucosa Donor 31	rectum
15	chr1:67604400-67605800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr1:67604600-67605800	Enhancers	Liver	Liver
17	chr1:67604600-67605800	Active TSS	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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