Variant report

Variant	rs10889668
Chromosome Location	chr1:67661244-67661245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:67660985..67663037-chr1:67673311..67676218,2	K562	blood:

Variant related genes	Relation type
ENSG00000162594	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10127763	0.91[CEU][hapmap]
rs10889665	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs10889667	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11801083	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1321156	0.91[CEU][hapmap]
rs1358748	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs1358749	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1884443	0.86[EUR][1000 genomes]
rs2064691	0.85[EUR][1000 genomes]
rs2180296	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2863203	0.89[EUR][1000 genomes]
rs4655521	0.82[EUR][1000 genomes]
rs4655522	0.81[EUR][1000 genomes]
rs4655681	0.87[EUR][1000 genomes]
rs4655688	0.83[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4655689	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4655690	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6588247	0.91[CEU][hapmap]
rs6666144	0.85[EUR][1000 genomes]
rs6683455	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6684024	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6687620	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6703475	0.85[EUR][1000 genomes]
rs7518757	0.80[EUR][1000 genomes]
rs7540900	0.91[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461751	chr1:67479598-67689036	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv546445	chr1:67479598-67689036	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67656000-67663400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr1:67656800-67661400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:67656800-67661400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:67657400-67661800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr1:67658000-67661400	Enhancers	GM12878-XiMat	blood
6	chr1:67658400-67661400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr1:67658600-67661600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr1:67659200-67662000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:67659400-67661400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr1:67659400-67661400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr1:67659400-67661800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr1:67659400-67662000	Enhancers	Primary T cells from cord blood	blood
13	chr1:67659400-67662800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:67660200-67662000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:67660800-67661400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr1:67660800-67661400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr1:67661200-67661400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:67661200-67661400	Enhancers	Small Intestine	intestine

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