Variant report
| Variant | rs11801161 |
|---|---|
| Chromosome Location | chr1:151455895-151455896 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:151445969..151447934-chr1:151453255..151456179,2 | MCF-7 | breast: | |
| 2 | chr1:151455325..151461982-chr1:151483284..151488715,8 | MCF-7 | breast: | |
| 3 | chr1:151429324..151435263-chr1:151450635..151458530,13 | MCF-7 | breast: | |
| 4 | chr1:151451688..151454498-chr1:151454592..151456398,2 | MCF-7 | breast: | |
| 5 | chr1:151429725..151432768-chr1:151453172..151456810,5 | MCF-7 | breast: | |
| 6 | chr1:151454493..151456172-chr1:151458137..151459889,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000143375 | Chromatin interaction |
| ENSG00000143442 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10127622 | 0.90[JPT][hapmap] |
| rs10788807 | 0.84[JPT][hapmap] |
| rs10888419 | 0.84[JPT][hapmap] |
| rs11204827 | 0.84[JPT][hapmap] |
| rs11204828 | 0.84[JPT][hapmap] |
| rs11809182 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12022973 | 1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12046420 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12240190 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1547832 | 0.84[JPT][hapmap] |
| rs1573129 | 0.84[JPT][hapmap] |
| rs2211435 | 0.84[JPT][hapmap] |
| rs2878950 | 1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs35350499 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4970955 | 0.85[JPT][hapmap] |
| rs6661111 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7552458 | 0.84[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916272 | chr1:150961809-151557253 | Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 219 gene(s) | inside rSNPs | diseases |
| 2 | nsv831581 | chr1:151289151-151478605 | Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:151455200-151456200 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
