Variant report

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151254003..151256272-chr1:151463468..151466051,2	MCF-7	breast:
2	1:151411623-151426875..1:151461759-151468043	Hela-S3	cervix:
3	chr1:151464854..151467789-chr1:151473265..151475428,2	K562	blood:
4	chr1:151436153..151438229-chr1:151463732..151466484,2	K562	blood:
5	1:151461759-151468043..1:151516085-151535167	Hela-S3	cervix:
6	chr1:151463912..151470062-chr1:151482602..151487656,8	MCF-7	breast:
7	chr1:151446557..151449406-chr1:151463511..151465918,2	MCF-7	breast:
8	1:151461759-151468043..1:151618750-151636526	K562	blood:
9	chr1:151463193..151465419-chr1:151471574..151473667,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10127622	0.89[JPT][hapmap]
rs10788807	0.84[JPT][hapmap]
rs10888416	0.80[ASN][1000 genomes]
rs10888419	0.84[JPT][hapmap]
rs11204827	0.84[JPT][hapmap]
rs11204828	0.84[JPT][hapmap]
rs11801161	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11809182	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12022973	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12046420	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12240190	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1547832	0.84[JPT][hapmap]
rs1573129	0.84[JPT][hapmap]
rs2211435	0.84[JPT][hapmap]
rs2337364	0.81[ASN][1000 genomes]
rs35350499	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4970955	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs6661111	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7355117	0.82[ASN][1000 genomes]
rs7552458	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
2	nsv831581	chr1:151289151-151478605	Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151459400-151468200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:151461000-151465000	Enhancers	GM12878-XiMat	blood
3	chr1:151463800-151465000	Enhancers	K562	blood
4	chr1:151464200-151465000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:151464200-151465200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:151464200-151466600	Weak transcription	Fetal Intestine Large	intestine
7	chr1:151464400-151465000	Enhancers	HepG2	liver
8	chr1:151464400-151466400	Weak transcription	Fetal Intestine Small	intestine
9	chr1:151464600-151465600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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