The 2.0 version of rSNPBase

Variant report

Variant rs11801990
Chromosome Location chr1:45192757-45192758
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:45181200-45194800 Weak transcription Brain Anterior Caudate brain
2 chr1:45185600-45194800 Weak transcription Dnd41 blood
3 chr1:45187800-45196200 Weak transcription Right Atrium heart
4 chr1:45188000-45195800 Weak transcription H1 Cell Line embryonic stem cell
5 chr1:45189400-45196200 Weak transcription Brain Germinal Matrix brain
6 chr1:45189400-45196200 Weak transcription Colonic Mucosa Colon
7 chr1:45189600-45195000 Weak transcription Rectal Smooth Muscle rectum
8 chr1:45189800-45194800 Weak transcription Rectal Mucosa Donor 29 rectum
9 chr1:45189800-45195000 Weak transcription Liver Liver
10 chr1:45189800-45205000 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:45190000-45192800 Enhancers GM12878-XiMat blood
12 chr1:45190000-45193600 Weak transcription Primary B cells from peripheral blood blood
13 chr1:45190000-45194800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr1:45190200-45196000 Weak transcription Primary T regulatory cells fromperipheralblood blood
15 chr1:45190400-45193400 Weak transcription Primary B cells from cord blood blood
16 chr1:45190600-45196200 Weak transcription Brain Hippocampus Middle brain
17 chr1:45190800-45194000 Weak transcription Primary T helper cells fromperipheralblood blood
18 chr1:45190800-45194800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr1:45190800-45194800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr1:45190800-45195000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
21 chr1:45191000-45192800 Enhancers HepG2 liver
22 chr1:45191000-45193400 Weak transcription Primary T cells from cord blood blood
23 chr1:45191000-45194800 Weak transcription Primary T helper naive cells fromperipheralblood blood
24 chr1:45191000-45195800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
25 chr1:45191200-45194000 Weak transcription Fetal Thymus thymus
26 chr1:45191200-45194800 Weak transcription Primary neutrophils fromperipheralblood blood
27 chr1:45191200-45194800 Weak transcription Primary T helper naive cells from peripheral blood blood
28 chr1:45191200-45194800 Weak transcription Primary T helper cells PMA-I stimulated --
29 chr1:45191200-45194800 Weak transcription Thymus Thymus
30 chr1:45191200-45196200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
31 chr1:45191400-45193400 Weak transcription Primary hematopoietic stem cells blood
32 chr1:45191400-45194800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
33 chr1:45191400-45194800 Weak transcription Primary T cells fromperipheralblood blood
34 chr1:45191400-45194800 Weak transcription Primary T killer naive cells fromperipheralblood blood
35 chr1:45191400-45194800 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr1:45191400-45196600 Weak transcription iPS-15b Cell Line embryonic stem cell
37 chr1:45192000-45192800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr1:45192000-45192800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
39 chr1:45192000-45192800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:45192000-45193200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr1:45192200-45192800 Enhancers NHDF-Ad bronchial
42 chr1:45192200-45193400 Enhancers Placenta Amnion Placenta Amnion
43 chr1:45192200-45196200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:45192400-45192800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr1:45192400-45192800 Enhancers HUES6 Cell Line embryonic stem cell
46 chr1:45192400-45192800 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
47 chr1:45192400-45192800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr1:45192400-45192800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr1:45192400-45192800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr1:45192400-45192800 Enhancers Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015