Variant report

Variant	rs11803089
Chromosome Location	chr1:84527930-84527931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11163916	1.00[EUR][1000 genomes]
rs11802352	1.00[EUR][1000 genomes]
rs11802582	1.00[EUR][1000 genomes]
rs3729868	1.00[EUR][1000 genomes]
rs41300502	1.00[EUR][1000 genomes]
rs41300514	1.00[EUR][1000 genomes]
rs41300516	1.00[EUR][1000 genomes]
rs41300534	1.00[EUR][1000 genomes]
rs41301174	1.00[EUR][1000 genomes]
rs57141381	1.00[AMR][1000 genomes]
rs624878	1.00[EUR][1000 genomes]
rs633253	1.00[EUR][1000 genomes]
rs639010	1.00[EUR][1000 genomes]
rs639940	1.00[EUR][1000 genomes]
rs642052	1.00[EUR][1000 genomes]
rs652426	1.00[EUR][1000 genomes]
rs655181	1.00[EUR][1000 genomes]
rs7524666	1.00[EUR][1000 genomes]
rs7524960	1.00[EUR][1000 genomes]
rs7532830	1.00[EUR][1000 genomes]
rs7533541	1.00[EUR][1000 genomes]
rs7538094	1.00[EUR][1000 genomes]
rs7540972	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1732	chr1:84499098-84544635	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv871655	chr1:84517261-84550849	Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84526600-84528600	Enhancers	NHEK	skin
2	chr1:84526800-84528200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:84526800-84528400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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