Variant report

Variant	rs11804305
Chromosome Location	chr1:154424497-154424498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:154325453..154327893-chr1:154424368..154426017,2	MCF-7	breast:
2	chr1:154424322..154425827-chr1:154428011..154430297,2	K562	blood:
3	chr1:154423682..154425869-chr1:154434875..154437152,2	MCF-7	breast:
4	chr1:154413948..154418058-chr1:154421616..154424516,3	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10159236	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10752642	0.85[EUR][1000 genomes]
rs11265618	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12023358	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12047973	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12048091	0.84[ASN][1000 genomes]
rs12048950	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12118074	0.85[EUR][1000 genomes]
rs12124333	0.85[EUR][1000 genomes]
rs14021	0.87[EUR][1000 genomes]
rs16836054	0.86[EUR][1000 genomes]
rs41302545	0.82[EUR][1000 genomes]
rs4308966	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4329505	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4345796	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4474240	0.85[EUR][1000 genomes]
rs4845626	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4845634	0.86[EUR][1000 genomes]
rs4845635	0.85[EUR][1000 genomes]
rs4845636	0.85[EUR][1000 genomes]
rs4845644	0.81[EUR][1000 genomes]
rs4845648	0.81[EUR][1000 genomes]
rs55800510	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55826755	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56233546	0.86[EUR][1000 genomes]
rs57502626	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61811362	0.81[EUR][1000 genomes]
rs61812592	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61812593	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61812594	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61812596	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61812599	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61812626	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61812631	0.86[EUR][1000 genomes]
rs61812654	0.81[EUR][1000 genomes]
rs6662503	0.84[EUR][1000 genomes]
rs6696177	0.80[EUR][1000 genomes]
rs72698167	0.86[EUR][1000 genomes]
rs7513603	0.85[EUR][1000 genomes]
rs7526247	0.80[EUR][1000 genomes]
rs7539745	0.81[EUR][1000 genomes]
rs7550664	0.81[EUR][1000 genomes]
rs9427076	0.81[EUR][1000 genomes]
rs9427082	0.82[EUR][1000 genomes]
rs9427415	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
3	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154403200-154426000	Weak transcription	Brain Angular Gyrus	brain
2	chr1:154406200-154425600	Weak transcription	Primary B cells from cord blood	blood
3	chr1:154408600-154425800	Weak transcription	Brain Substantia Nigra	brain
4	chr1:154408800-154425600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:154409200-154425800	Weak transcription	Right Atrium	heart
6	chr1:154409400-154424600	Weak transcription	Stomach Mucosa	stomach
7	chr1:154412600-154425800	Weak transcription	Psoas Muscle	Psoas
8	chr1:154412800-154425800	Weak transcription	HepG2	liver
9	chr1:154414600-154426000	Weak transcription	Thymus	Thymus
10	chr1:154414800-154436000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:154415800-154425800	Weak transcription	Esophagus	oesophagus
12	chr1:154416200-154435800	Strong transcription	Liver	Liver
13	chr1:154416600-154425600	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr1:154417400-154428000	Strong transcription	Skeletal Muscle Male	skeletal muscle
15	chr1:154417800-154426000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr1:154418000-154425600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:154418000-154425800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:154418000-154428000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr1:154418000-154440000	Weak transcription	Small Intestine	intestine
20	chr1:154418200-154425000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:154418600-154425400	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr1:154418600-154432800	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr1:154418800-154425800	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr1:154419000-154425000	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr1:154419200-154425200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr1:154419200-154425400	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr1:154419200-154425600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:154419200-154425800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr1:154419200-154425800	Strong transcription	Stomach Smooth Muscle	stomach
30	chr1:154419200-154427200	Weak transcription	Ovary	ovary
31	chr1:154419200-154432200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr1:154419200-154435800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr1:154419400-154425600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr1:154419600-154425600	Weak transcription	Osteobl	bone
35	chr1:154420200-154425000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr1:154420400-154424800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr1:154420400-154424800	Strong transcription	Left Ventricle	heart
38	chr1:154420400-154425000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr1:154420400-154425400	Strong transcription	Primary T cells from cord blood	blood
40	chr1:154420400-154425400	Strong transcription	Duodenum Mucosa	Duodenum
41	chr1:154420400-154425400	Strong transcription	Lung	lung
42	chr1:154420400-154425800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr1:154420400-154425800	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr1:154420600-154425400	Strong transcription	Spleen	Spleen
45	chr1:154420600-154425800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr1:154420800-154425000	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr1:154420800-154425000	Strong transcription	Right Ventricle	heart
48	chr1:154420800-154425400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr1:154420800-154428000	Strong transcription	Colon Smooth Muscle	Colon
50	chr1:154421200-154425000	Strong transcription	NHLF	lung

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