The 2.0 version of rSNPBase

Variant report

Variant rs61812599
Chromosome Location chr1:154421554-154421555
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:154403200-154426000 Weak transcription Brain Angular Gyrus brain
2 chr1:154406000-154423200 Weak transcription Brain Inferior Temporal Lobe brain
3 chr1:154406200-154425600 Weak transcription Primary B cells from cord blood blood
4 chr1:154408600-154425800 Weak transcription Brain Substantia Nigra brain
5 chr1:154408800-154425600 Weak transcription Brain Cingulate Gyrus brain
6 chr1:154409200-154425800 Weak transcription Right Atrium heart
7 chr1:154409400-154424600 Weak transcription Stomach Mucosa stomach
8 chr1:154412600-154425800 Weak transcription Psoas Muscle Psoas
9 chr1:154412800-154425800 Weak transcription HepG2 liver
10 chr1:154413200-154422600 Weak transcription Primary B cells from peripheral blood blood
11 chr1:154414400-154424400 Strong transcription Primary monocytes fromperipheralblood blood
12 chr1:154414400-154424400 Strong transcription Monocytes-CD14+_RO01746 blood
13 chr1:154414600-154424400 Strong transcription Primary neutrophils fromperipheralblood blood
14 chr1:154414600-154426000 Weak transcription Thymus Thymus
15 chr1:154414800-154436000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr1:154415200-154424000 Weak transcription Fetal Stomach stomach
17 chr1:154415800-154425800 Weak transcription Esophagus oesophagus
18 chr1:154416200-154435800 Strong transcription Liver Liver
19 chr1:154416600-154424400 Weak transcription Colonic Mucosa Colon
20 chr1:154416600-154425600 Strong transcription Skeletal Muscle Female skeletal muscle
21 chr1:154417400-154428000 Strong transcription Skeletal Muscle Male skeletal muscle
22 chr1:154417800-154422000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:154417800-154426000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
24 chr1:154418000-154425600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr1:154418000-154425800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
26 chr1:154418000-154428000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
27 chr1:154418000-154440000 Weak transcription Small Intestine intestine
28 chr1:154418200-154425000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr1:154418600-154425400 Strong transcription Sigmoid Colon Sigmoid Colon
30 chr1:154418600-154432800 Strong transcription Rectal Mucosa Donor 29 rectum
31 chr1:154418800-154425800 Strong transcription Primary T helper cells fromperipheralblood blood
32 chr1:154419000-154424400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
33 chr1:154419000-154425000 Strong transcription Primary T cells fromperipheralblood blood
34 chr1:154419200-154425200 Strong transcription Primary T helper naive cells fromperipheralblood blood
35 chr1:154419200-154425400 Strong transcription Primary T helper cells PMA-I stimulated --
36 chr1:154419200-154425600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr1:154419200-154425800 Strong transcription Primary T regulatory cells fromperipheralblood blood
38 chr1:154419200-154425800 Strong transcription Stomach Smooth Muscle stomach
39 chr1:154419200-154427200 Weak transcription Ovary ovary
40 chr1:154419200-154432200 Weak transcription Placenta Amnion Placenta Amnion
41 chr1:154419200-154435800 Weak transcription ES-I3 Cell Line embryonic stem cell
42 chr1:154419400-154423200 Weak transcription Muscle Satellite Cultured Cells --
43 chr1:154419400-154425600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr1:154419600-154422600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr1:154419600-154425600 Weak transcription Osteobl bone
46 chr1:154419800-154423200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
47 chr1:154420200-154425000 Strong transcription Breast Myoepithelial Primary Cells Breast
48 chr1:154420400-154422600 Strong transcription Primary T killer naive cells fromperipheralblood blood
49 chr1:154420400-154423600 Strong transcription Primary T helper naive cells from peripheral blood blood
50 chr1:154420400-154424800 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015