Variant report

Variant	rs11804564
Chromosome Location	chr1:210902739-210902740
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12064860	1.00[EUR][1000 genomes]
rs12086850	1.00[EUR][1000 genomes]
rs12092331	1.00[EUR][1000 genomes]
rs17016987	1.00[AMR][1000 genomes]
rs4297293	1.00[EUR][1000 genomes]
rs58495788	1.00[EUR][1000 genomes]
rs74156005	1.00[EUR][1000 genomes]
rs74156006	1.00[EUR][1000 genomes]
rs74156007	1.00[EUR][1000 genomes]
rs74156008	1.00[EUR][1000 genomes]
rs74158943	1.00[EUR][1000 genomes]
rs74158948	1.00[EUR][1000 genomes]
rs74158964	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873153	chr1:210900481-210994339	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210871200-210932000	Weak transcription	HSMM	muscle
2	chr1:210889200-210903200	Weak transcription	HSMMtube	muscle
3	chr1:210901600-210908200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:210902000-210903000	Enhancers	Liver	Liver
5	chr1:210902400-210907600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:210902600-210903000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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