Variant report

Variant	rs74158943
Chromosome Location	chr1:210794835-210794836
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11804564	1.00[EUR][1000 genomes]
rs12064860	1.00[EUR][1000 genomes]
rs12086850	1.00[EUR][1000 genomes]
rs12092331	1.00[EUR][1000 genomes]
rs4297293	1.00[EUR][1000 genomes]
rs58495788	1.00[EUR][1000 genomes]
rs74156005	1.00[EUR][1000 genomes]
rs74156006	1.00[EUR][1000 genomes]
rs74156007	1.00[EUR][1000 genomes]
rs74156008	1.00[EUR][1000 genomes]
rs74158948	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74158964	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv522480	chr1:210779936-210848344	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
3	esv1825229	chr1:210789477-210854976	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210790400-210801800	Weak transcription	Pancreas	Pancrea
2	chr1:210790600-210796800	Weak transcription	Ovary	ovary
3	chr1:210790600-210807000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:210790800-210795000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:210792800-210795200	Enhancers	Brain Hippocampus Middle	brain
6	chr1:210793000-210795000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:210793400-210795800	Enhancers	Brain Cingulate Gyrus	brain
8	chr1:210793600-210795400	Enhancers	Brain Angular Gyrus	brain
9	chr1:210793600-210795800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr1:210793800-210795200	Enhancers	Brain Anterior Caudate	brain
11	chr1:210793800-210797800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:210794000-210795200	Weak transcription	HSMMtube	muscle
13	chr1:210794600-210795200	Enhancers	Brain Germinal Matrix	brain
14	chr1:210794600-210795200	Weak transcription	Brain Substantia Nigra	brain
15	chr1:210794800-210796200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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