Variant report

Variant	rs4297293
Chromosome Location	chr1:210761462-210761463
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11804564	1.00[EUR][1000 genomes]
rs12064860	1.00[EUR][1000 genomes]
rs12086850	1.00[EUR][1000 genomes]
rs12092331	1.00[EUR][1000 genomes]
rs58495788	1.00[EUR][1000 genomes]
rs74156005	1.00[EUR][1000 genomes]
rs74156006	1.00[EUR][1000 genomes]
rs74156007	1.00[EUR][1000 genomes]
rs74156008	1.00[EUR][1000 genomes]
rs74158943	1.00[EUR][1000 genomes]
rs74158948	1.00[EUR][1000 genomes]
rs74158964	1.00[EUR][1000 genomes]
rs7528689	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873149	chr1:210749312-210793972	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210756200-210771800	Weak transcription	Left Ventricle	heart
2	chr1:210758600-210763000	Weak transcription	A549	lung
3	chr1:210760000-210761600	Enhancers	HSMMtube	muscle
4	chr1:210760200-210761600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:210760400-210763200	Weak transcription	Brain Anterior Caudate	brain
6	chr1:210760400-210763200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:210760600-210763200	Weak transcription	Brain Angular Gyrus	brain
8	chr1:210760800-210763000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:210761000-210761600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:210761000-210761600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:210761000-210761600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
12	chr1:210761000-210761600	ZNF genes & repeats	Ovary	ovary
13	chr1:210761000-210761600	Weak transcription	Right Ventricle	heart
14	chr1:210761000-210762400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:210761000-210763200	Weak transcription	Brain Hippocampus Middle	brain
16	chr1:210761000-210763200	Weak transcription	Brain Substantia Nigra	brain
17	chr1:210761200-210761600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:210761200-210761800	Enhancers	HSMM	muscle
19	chr1:210761200-210762000	Weak transcription	Osteobl	bone
20	chr1:210761400-210762400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:210761400-210762800	Weak transcription	NH-A	brain
22	chr1:210761400-210771600	Weak transcription	Gastric	stomach

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