Variant report

Variant	rs11804693
Chromosome Location	chr1:217010657-217010658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10863273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10863274	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117692	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11572564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11572565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11807172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11810458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059338	1.00[AFR][1000 genomes]
rs12059344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12063350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12083036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12083048	1.00[AFR][1000 genomes]
rs12085183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13375451	1.00[AMR][1000 genomes]
rs60636699	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61307714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6657430	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6657526	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6657645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6691726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6696375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6697946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6698232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6698423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096058	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7515026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7518028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7529226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7532366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7538834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7541274	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7547296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7548331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7552063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7553727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7554016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217004400-217014600	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:217006000-217038000	Weak transcription	Pancreas	Pancrea
3	chr1:217010200-217011800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:217010400-217011600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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