Variant report

Variant	rs73096058
Chromosome Location	chr1:217006534-217006535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:217005236..217007424-chr12:14926627..14928347,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246705	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10863273	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10863274	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117690	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117692	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117695	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117696	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117698	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117700	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117703	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117704	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11117705	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11572564	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11572565	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11804693	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11807172	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11810458	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12059338	0.95[AFR][1000 genomes]
rs12059344	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060355	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12063350	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12083036	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12083048	0.95[AFR][1000 genomes]
rs12085183	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086350	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086358	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089889	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13375451	1.00[AMR][1000 genomes]
rs60636699	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61307714	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6657430	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6657526	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6657645	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6691726	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6696375	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6697946	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6698232	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6698423	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73096082	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7515026	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7518028	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7529226	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7532366	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7538834	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7541274	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7547296	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7548331	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7552063	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7553727	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7554016	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217003200-217007200	Enhancers	Fetal Heart	heart
2	chr1:217004400-217006800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr1:217004400-217014600	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:217004800-217008400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:217005600-217009800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:217005800-217007200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:217005800-217008000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr1:217006000-217038000	Weak transcription	Pancreas	Pancrea
9	chr1:217006200-217007200	Weak transcription	Left Ventricle	heart

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