Variant report

Variant	rs12059338
Chromosome Location	chr1:217019855-217019856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10863273	1.00[AFR][1000 genomes]
rs10863274	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs11117690	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11117692	0.91[YRI][hapmap];0.96[AFR][1000 genomes]
rs11117695	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11117696	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11117698	1.00[AFR][1000 genomes]
rs11117700	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11117703	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11117704	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11117705	1.00[AFR][1000 genomes]
rs11572564	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11572565	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11804693	1.00[AFR][1000 genomes]
rs11807172	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11810458	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12059344	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12060355	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12063350	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12083036	1.00[AFR][1000 genomes]
rs12083048	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12085183	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12086350	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12086358	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12089889	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs60636699	0.93[AFR][1000 genomes]
rs61307714	1.00[AFR][1000 genomes]
rs6657430	0.96[AFR][1000 genomes]
rs6657526	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs6657645	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6691726	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6696375	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6697946	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6698232	1.00[AFR][1000 genomes]
rs6698423	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs73096058	0.95[AFR][1000 genomes]
rs73096082	1.00[AFR][1000 genomes]
rs7515026	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7518028	1.00[AFR][1000 genomes]
rs7529226	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7532366	1.00[AFR][1000 genomes]
rs7538834	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7541274	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7547296	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7548331	1.00[AFR][1000 genomes]
rs7552063	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7553727	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7554016	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217006000-217038000	Weak transcription	Pancreas	Pancrea
2	chr1:217013400-217020400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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