Variant report
| Variant | rs11807004 |
|---|---|
| Chromosome Location | chr1:211379683-211379684 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:211377631..211380147-chr1:211432111..211434053,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000117625 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs55758006 | 0.83[ASN][1000 genomes] |
| rs56046522 | 0.83[ASN][1000 genomes] |
| rs56381832 | 0.83[ASN][1000 genomes] |
| rs61850984 | 0.80[ASN][1000 genomes] |
| rs61850985 | 0.80[ASN][1000 genomes] |
| rs61850986 | 0.80[ASN][1000 genomes] |
| rs7522532 | 0.83[ASN][1000 genomes] |
| rs7523875 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1806574 | chr1:211369721-211383129 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv1808906 | chr1:211369721-211383129 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv945277 | chr1:211377389-211382878 | Enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
