Variant report

Variant	rs61850985
Chromosome Location	chr1:211417041-211417042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11577985	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11581409	0.83[EUR][1000 genomes]
rs11581989	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11590228	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11807004	0.80[ASN][1000 genomes]
rs17017361	0.86[EUR][1000 genomes]
rs55758006	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55941941	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56046522	0.97[ASN][1000 genomes]
rs56381832	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57331968	0.86[EUR][1000 genomes]
rs61850980	0.91[ASN][1000 genomes]
rs61850982	0.86[EUR][1000 genomes]
rs61850984	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61850986	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514863	0.82[EUR][1000 genomes]
rs7522532	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7523875	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61850985	LINC00467	cis	Muscle Skeletal	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211412800-211421400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:211415200-211418600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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