Variant report

Variant	rs7514863
Chromosome Location	chr1:211484100-211484101
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211478824..211485185-chr1:211486751..211490666,6	K562	blood:
2	chr1:211481961..211484354-chr1:211487300..211488898,2	K562	blood:
3	chr1:211470409..211472058-chr1:211482921..211484706,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11577985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs11581989	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11582143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11586974	0.92[YRI][hapmap]
rs11590228	0.87[EUR][1000 genomes]
rs12041498	0.94[CEU][hapmap];0.81[YRI][hapmap];0.82[EUR][1000 genomes]
rs17017361	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17017394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17017399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17017431	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17017432	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34318448	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3767380	0.92[YRI][hapmap]
rs55654731	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55941941	0.87[EUR][1000 genomes]
rs56380051	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61848978	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61848980	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61848982	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61850984	0.84[EUR][1000 genomes]
rs61850985	0.82[EUR][1000 genomes]
rs61850986	0.84[EUR][1000 genomes]
rs61851029	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61851030	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61851033	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6666324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7514863	LINC00467	cis	Muscle Skeletal	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211434400-211487000	Weak transcription	Gastric	stomach
2	chr1:211444800-211491200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr1:211445800-211486800	Weak transcription	Esophagus	oesophagus
4	chr1:211447800-211486200	Weak transcription	Stomach Mucosa	stomach
5	chr1:211455000-211486800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:211456600-211486000	Weak transcription	Small Intestine	intestine
7	chr1:211461200-211499600	Weak transcription	Psoas Muscle	Psoas
8	chr1:211461400-211499600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:211461600-211499600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:211465600-211486800	Weak transcription	Pancreas	Pancrea
11	chr1:211465800-211486800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:211466200-211485800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr1:211466800-211486000	Weak transcription	Aorta	Aorta
14	chr1:211467000-211486800	Weak transcription	Spleen	Spleen
15	chr1:211467200-211486600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:211467200-211493800	Weak transcription	Fetal Brain Male	brain
17	chr1:211467400-211485600	Weak transcription	Brain Angular Gyrus	brain
18	chr1:211467600-211486000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr1:211467800-211486200	Weak transcription	Brain Substantia Nigra	brain
20	chr1:211467800-211494200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr1:211468000-211485800	Weak transcription	Colon Smooth Muscle	Colon
22	chr1:211469400-211485600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr1:211470000-211486000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr1:211472000-211485600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:211472000-211486600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr1:211472000-211487000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr1:211473800-211486000	Weak transcription	Lung	lung
28	chr1:211473800-211486600	Weak transcription	Fetal Intestine Small	intestine
29	chr1:211473800-211486600	Weak transcription	Fetal Stomach	stomach
30	chr1:211474200-211486200	Weak transcription	Colonic Mucosa	Colon
31	chr1:211474400-211485600	Weak transcription	Ovary	ovary
32	chr1:211474400-211486000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr1:211474400-211486200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr1:211474800-211486200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr1:211474800-211497000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr1:211475800-211485600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr1:211476800-211485600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr1:211477000-211485600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr1:211477200-211485600	Weak transcription	Brain Hippocampus Middle	brain
40	chr1:211477200-211485800	Weak transcription	HSMMtube	muscle
41	chr1:211477600-211485600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr1:211477600-211486000	Weak transcription	Brain Germinal Matrix	brain
43	chr1:211477800-211485400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr1:211477800-211485800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr1:211477800-211486400	Weak transcription	HMEC	breast
46	chr1:211478200-211485600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr1:211478200-211485600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr1:211478400-211485600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr1:211478600-211485400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr1:211478600-211485600	Weak transcription	Adipose Nuclei	Adipose

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