Variant report

Variant	rs56380051
Chromosome Location	chr1:211510353-211510354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211499439..211506012-chr1:211509469..211515158,9	K562	blood:
2	chr1:211509710..211514697-chr1:211515653..211521116,6	K562	blood:
3	chr1:211509631..211511913-chr1:211521959..211524748,2	K562	blood:
4	chr1:211509250..211511286-chr1:211512898..211514844,2	MCF-7	breast:
5	chr1:211500641..211502521-chr1:211509296..211511473,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082512	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11577985	0.85[ASN][1000 genomes]
rs11581989	0.82[ASN][1000 genomes]
rs11582143	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11590228	0.82[ASN][1000 genomes]
rs17017361	0.83[EUR][1000 genomes]
rs17017394	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17017399	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17017431	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17017432	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34318448	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55654731	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55941941	0.85[ASN][1000 genomes]
rs61848978	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61848980	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61848982	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61851029	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61851030	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61851033	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6666324	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7514863	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56380051	LINC00467	cis	Muscle Skeletal	GTEx

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211501200-211511000	Enhancers	Stomach Mucosa	stomach
2	chr1:211501200-211515200	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr1:211502400-211519000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:211502600-211519000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:211504200-211511000	Weak transcription	Placenta	Placenta
6	chr1:211504800-211513000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:211505000-211518800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:211505000-211530200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:211505600-211510600	Weak transcription	Right Atrium	heart
10	chr1:211505800-211511200	Weak transcription	Lung	lung
11	chr1:211505800-211512200	Weak transcription	Fetal Stomach	stomach
12	chr1:211505800-211512800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:211505800-211513000	Weak transcription	NHEK	skin
14	chr1:211505800-211529800	Weak transcription	Ovary	ovary
15	chr1:211506000-211512600	Weak transcription	HSMMtube	muscle
16	chr1:211506000-211512800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:211506000-211514200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr1:211506000-211517200	Weak transcription	Fetal Lung	lung
19	chr1:211506000-211518800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr1:211506200-211510600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:211506200-211514400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:211506200-211517400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr1:211506600-211512200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr1:211506600-211515200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:211506600-211516800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr1:211507200-211514400	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr1:211507800-211519000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:211508000-211511400	Enhancers	Colonic Mucosa	Colon
29	chr1:211508000-211515200	Enhancers	Pancreas	Pancrea
30	chr1:211508200-211511200	Enhancers	Gastric	stomach
31	chr1:211508400-211510400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr1:211508400-211510600	Enhancers	Spleen	Spleen
33	chr1:211508400-211519000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:211509000-211510400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr1:211509000-211511600	Enhancers	Left Ventricle	heart
36	chr1:211509200-211510400	Enhancers	Fetal Muscle Trunk	muscle
37	chr1:211509200-211511800	Enhancers	Thymus	Thymus
38	chr1:211509200-211512800	Weak transcription	Esophagus	oesophagus
39	chr1:211509200-211518800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr1:211509400-211510600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr1:211509400-211511400	Enhancers	Primary hematopoietic stem cells	blood
42	chr1:211509400-211516600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr1:211509400-211519000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr1:211509600-211511200	Enhancers	Fetal Thymus	thymus
45	chr1:211509600-211511800	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr1:211509600-211512400	Weak transcription	Hela-S3	cervix
47	chr1:211509600-211514200	Weak transcription	K562	blood
48	chr1:211509600-211515400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr1:211509600-211519000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr1:211509800-211510400	Enhancers	Primary T helper cells PMA-I stimulated	--

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