Variant report

Variant	rs61851033
Chromosome Location	chr1:211509218-211509219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211507738..211509573-chr1:211515799..211517354,2	K562	blood:
2	chr1:211498955..211501827-chr1:211507138..211510053,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082512	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11577985	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11581989	0.85[ASN][1000 genomes]
rs11582143	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11590228	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17017361	0.85[EUR][1000 genomes]
rs17017394	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17017399	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17017431	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17017432	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34318448	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55654731	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55941941	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56380051	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61848978	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61848980	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61848982	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61851029	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61851030	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6666324	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7514863	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61851033	LINC00467	cis	Muscle Skeletal	GTEx

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211501200-211511000	Enhancers	Stomach Mucosa	stomach
2	chr1:211501200-211515200	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr1:211502400-211519000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:211502600-211519000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:211504200-211511000	Weak transcription	Placenta	Placenta
6	chr1:211504800-211513000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:211505000-211518800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:211505000-211530200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:211505600-211510600	Weak transcription	Right Atrium	heart
10	chr1:211505800-211511200	Weak transcription	Lung	lung
11	chr1:211505800-211512200	Weak transcription	Fetal Stomach	stomach
12	chr1:211505800-211512800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:211505800-211513000	Weak transcription	NHEK	skin
14	chr1:211505800-211529800	Weak transcription	Ovary	ovary
15	chr1:211506000-211509800	Weak transcription	Adipose Nuclei	Adipose
16	chr1:211506000-211512600	Weak transcription	HSMMtube	muscle
17	chr1:211506000-211512800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:211506000-211514200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:211506000-211517200	Weak transcription	Fetal Lung	lung
20	chr1:211506000-211518800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr1:211506200-211509800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr1:211506200-211510600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:211506200-211514400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:211506200-211517400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr1:211506600-211512200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr1:211506600-211515200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr1:211506600-211516800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr1:211507200-211514400	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr1:211507400-211509600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:211507800-211519000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr1:211508000-211509600	Enhancers	K562	blood
32	chr1:211508000-211511400	Enhancers	Colonic Mucosa	Colon
33	chr1:211508000-211515200	Enhancers	Pancreas	Pancrea
34	chr1:211508200-211509400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr1:211508200-211509800	Enhancers	Small Intestine	intestine
36	chr1:211508200-211509800	Flanking Active TSS	GM12878-XiMat	blood
37	chr1:211508200-211509800	Enhancers	HUVEC	blood vessel
38	chr1:211508200-211510000	Enhancers	Fetal Intestine Small	intestine
39	chr1:211508200-211511200	Enhancers	Gastric	stomach
40	chr1:211508400-211509800	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr1:211508400-211509800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr1:211508400-211509800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr1:211508400-211510000	Flanking Active TSS	Primary B cells from cord blood	blood
44	chr1:211508400-211510000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr1:211508400-211510000	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr1:211508400-211510400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr1:211508400-211510600	Enhancers	Spleen	Spleen
48	chr1:211508400-211519000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr1:211508600-211509800	Enhancers	Colon Smooth Muscle	Colon
50	chr1:211508600-211510000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood

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