Variant report

Variant	rs55758006
Chromosome Location	chr1:211401552-211401553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11577985	0.83[ASN][1000 genomes]
rs11581989	0.86[ASN][1000 genomes]
rs11590228	0.86[ASN][1000 genomes]
rs11807004	0.83[ASN][1000 genomes]
rs12071464	0.96[EUR][1000 genomes]
rs55941941	0.83[ASN][1000 genomes]
rs56046522	1.00[ASN][1000 genomes]
rs56381832	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61850977	0.98[EUR][1000 genomes]
rs61850980	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61850984	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61850985	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61850986	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7522532	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7523875	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211397800-211405200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:211400800-211403400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr1:211401200-211401600	Weak transcription	Primary T helper cells PMA-I stimulated	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links