Variant report

Variant	rs11807621
Chromosome Location	chr1:196420516-196420517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11810883	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56287411	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56393523	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58760665	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134327	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134328	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136532	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136534	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136536	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136537	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136538	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136541	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136546	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136548	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196411200-196420800	Enhancers	Liver	Liver
2	chr1:196417000-196421600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr1:196417200-196425000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:196417400-196428600	Weak transcription	Ovary	ovary
5	chr1:196417600-196422200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:196418200-196421600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:196419400-196421000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:196419400-196421000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:196419600-196420600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:196420000-196421800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr1:196420000-196460800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr1:196420400-196420600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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