Variant report

Variant	rs74134328
Chromosome Location	chr1:196412483-196412484
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11807621	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11810883	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56287411	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56393523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58760665	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134327	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136531	0.83[AFR][1000 genomes]
rs74136532	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136534	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136536	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136537	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136538	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136548	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469680	chr1:196259846-196419016	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv482746	chr1:196259846-196419016	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196395200-196416400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:196401600-196416400	Weak transcription	Ovary	ovary
3	chr1:196411200-196420800	Enhancers	Liver	Liver
4	chr1:196411600-196414800	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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