Variant report

Variant	rs74136536
Chromosome Location	chr1:196370631-196370632
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11802997	0.84[AFR][1000 genomes]
rs11803170	0.84[AFR][1000 genomes]
rs11805373	0.84[AFR][1000 genomes]
rs11806027	0.84[AFR][1000 genomes]
rs11806585	0.84[AFR][1000 genomes]
rs11807621	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11809793	0.84[AFR][1000 genomes]
rs11810883	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35084486	0.84[AFR][1000 genomes]
rs55797122	0.84[AFR][1000 genomes]
rs56287411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56393523	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58760665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60185937	0.84[AFR][1000 genomes]
rs74133630	0.84[AFR][1000 genomes]
rs74133633	0.84[AFR][1000 genomes]
rs74133635	0.84[AFR][1000 genomes]
rs74133636	0.84[AFR][1000 genomes]
rs74133641	0.84[AFR][1000 genomes]
rs74133642	0.84[AFR][1000 genomes]
rs74133644	0.81[AFR][1000 genomes]
rs74133650	0.84[AFR][1000 genomes]
rs74133655	0.84[AFR][1000 genomes]
rs74134327	1.00[AMR][1000 genomes]
rs74134328	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136503	0.84[AFR][1000 genomes]
rs74136506	0.84[AFR][1000 genomes]
rs74136511	0.84[AFR][1000 genomes]
rs74136514	0.84[AFR][1000 genomes]
rs74136530	0.87[AFR][1000 genomes]
rs74136531	0.97[AFR][1000 genomes]
rs74136532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136541	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136546	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136548	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469680	chr1:196259846-196419016	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv482746	chr1:196259846-196419016	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv872953	chr1:196286639-196411281	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1826904	chr1:196291977-196371432	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
7	nsv872954	chr1:196304863-196387809	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv872955	chr1:196339655-196374780	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv548742	chr1:196339655-196391866	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv872956	chr1:196339655-196411281	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv872957	chr1:196347066-196411281	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196343400-196377200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:196356400-196375600	Weak transcription	Fetal Kidney	kidney
3	chr1:196358000-196393800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:196368800-196370800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:196369000-196371000	Enhancers	HUVEC	blood vessel
6	chr1:196369400-196370800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:196369800-196370800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:196369800-196370800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:196369800-196371200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:196370000-196370800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:196370000-196371200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:196370200-196371200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr1:196370200-196375800	Weak transcription	Fetal Lung	lung
14	chr1:196370400-196371000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:196370400-196376000	Weak transcription	Ovary	ovary
16	chr1:196370600-196371000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:196370600-196372200	Enhancers	Liver	Liver
18	chr1:196370600-196372200	Enhancers	HepG2	liver
19	chr1:196370600-196372400	Weak transcription	Osteobl	bone
20	chr1:196370600-196373000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr1:196370600-196373200	Weak transcription	NH-A	brain
22	chr1:196370600-196373600	Weak transcription	HSMM	muscle
23	chr1:196370600-196375600	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links