Variant report
| Variant | rs74133630 |
|---|---|
| Chromosome Location | chr1:196196461-196196462 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:196195233..196196964-chr1:196196967..196198866,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11802442 | 0.94[AFR][1000 genomes] |
| rs11802997 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11803170 | 1.00[AFR][1000 genomes] |
| rs11805373 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11806027 | 1.00[AFR][1000 genomes] |
| rs11806585 | 1.00[AFR][1000 genomes] |
| rs11809793 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35084486 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55797122 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56287411 | 0.84[AFR][1000 genomes] |
| rs57962893 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58760665 | 0.84[AFR][1000 genomes] |
| rs60185937 | 1.00[AFR][1000 genomes] |
| rs74133633 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74133635 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74133636 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74133641 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74133642 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74133644 | 0.97[AFR][1000 genomes] |
| rs74133650 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74133655 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74136503 | 1.00[AFR][1000 genomes] |
| rs74136506 | 1.00[AFR][1000 genomes] |
| rs74136508 | 0.91[AFR][1000 genomes] |
| rs74136511 | 1.00[AFR][1000 genomes] |
| rs74136514 | 1.00[AFR][1000 genomes] |
| rs74136530 | 0.97[AFR][1000 genomes] |
| rs74136531 | 0.87[AFR][1000 genomes] |
| rs74136532 | 0.84[AFR][1000 genomes] |
| rs74136534 | 0.84[AFR][1000 genomes] |
| rs74136536 | 0.84[AFR][1000 genomes] |
| rs74136537 | 0.84[AFR][1000 genomes] |
| rs74136538 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv872948 | chr1:195872295-196236425 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv534209 | chr1:196011881-196208885 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv872952 | chr1:196174790-196304223 | Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv548741 | chr1:196186750-196293493 | Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:196194800-196205200 | Strong transcription | Liver | Liver |
| 2 | chr1:196195200-196197800 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 3 | chr1:196195600-196210600 | Weak transcription | Fetal Brain Male | brain |
