Variant report

Variant	rs11803170
Chromosome Location	chr1:196324294-196324295
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:196324245..196324925-chr1:196342034..196342605,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11802442	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11802997	1.00[AFR][1000 genomes]
rs11805373	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11806027	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11806585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11809793	1.00[AFR][1000 genomes]
rs11810883	0.90[YRI][hapmap]
rs35084486	1.00[AFR][1000 genomes]
rs55797122	1.00[AFR][1000 genomes]
rs56287411	0.84[AFR][1000 genomes]
rs57962893	0.94[AFR][1000 genomes]
rs58760665	0.84[AFR][1000 genomes]
rs60185937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133630	1.00[AFR][1000 genomes]
rs74133633	1.00[AFR][1000 genomes]
rs74133635	1.00[AFR][1000 genomes]
rs74133636	1.00[AFR][1000 genomes]
rs74133641	1.00[AFR][1000 genomes]
rs74133642	1.00[AFR][1000 genomes]
rs74133644	0.97[AFR][1000 genomes]
rs74133650	1.00[AFR][1000 genomes]
rs74133655	1.00[AFR][1000 genomes]
rs74134367	1.00[AMR][1000 genomes]
rs74136503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136508	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136528	1.00[AMR][1000 genomes]
rs74136530	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136531	0.87[AFR][1000 genomes]
rs74136532	0.84[AFR][1000 genomes]
rs74136533	1.00[AMR][1000 genomes]
rs74136534	0.84[AFR][1000 genomes]
rs74136536	0.84[AFR][1000 genomes]
rs74136537	0.84[AFR][1000 genomes]
rs74136538	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832237	chr1:196205674-196328500	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv469680	chr1:196259846-196419016	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv482746	chr1:196259846-196419016	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv872953	chr1:196286639-196411281	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1826904	chr1:196291977-196371432	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv872954	chr1:196304863-196387809	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196303200-196332600	Weak transcription	Ovary	ovary
2	chr1:196324200-196324600	Enhancers	Liver	Liver

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