Variant report

Variant	rs11805373
Chromosome Location	chr1:196217168-196217169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11802442	0.94[AFR][1000 genomes]
rs11802997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11803170	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11806027	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11806585	1.00[AFR][1000 genomes]
rs11809793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35084486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55797122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56287411	0.84[AFR][1000 genomes]
rs57962893	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58760665	0.84[AFR][1000 genomes]
rs60185937	1.00[AFR][1000 genomes]
rs74133630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133644	0.97[AFR][1000 genomes]
rs74133650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136503	1.00[AFR][1000 genomes]
rs74136506	1.00[AFR][1000 genomes]
rs74136508	0.91[AFR][1000 genomes]
rs74136511	1.00[AFR][1000 genomes]
rs74136514	1.00[AFR][1000 genomes]
rs74136530	0.97[AFR][1000 genomes]
rs74136531	0.87[AFR][1000 genomes]
rs74136532	0.84[AFR][1000 genomes]
rs74136534	0.84[AFR][1000 genomes]
rs74136536	0.84[AFR][1000 genomes]
rs74136537	0.84[AFR][1000 genomes]
rs74136538	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872948	chr1:195872295-196236425	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv872952	chr1:196174790-196304223	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv548741	chr1:196186750-196293493	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv832237	chr1:196205674-196328500	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196197800-196218400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:196212000-196219000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:196213600-196219000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:196214000-196241400	Weak transcription	Liver	Liver
5	chr1:196214200-196217600	Weak transcription	Fetal Stomach	stomach
6	chr1:196214400-196220200	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:196214600-196247800	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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