Variant report
Variant | rs74136530 |
---|---|
Chromosome Location | chr1:196343255-196343256 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:196342199..196343885-chr1:196346631..196348426,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11802442 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11802997 | 0.97[AFR][1000 genomes] |
rs11803170 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11805373 | 0.97[AFR][1000 genomes] |
rs11806027 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11806585 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11809793 | 0.97[AFR][1000 genomes] |
rs35084486 | 0.97[AFR][1000 genomes] |
rs55797122 | 0.97[AFR][1000 genomes] |
rs56287411 | 0.87[AFR][1000 genomes] |
rs57962893 | 0.91[AFR][1000 genomes] |
rs58760665 | 0.87[AFR][1000 genomes] |
rs60185937 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74133630 | 0.97[AFR][1000 genomes] |
rs74133633 | 0.97[AFR][1000 genomes] |
rs74133635 | 0.97[AFR][1000 genomes] |
rs74133636 | 0.97[AFR][1000 genomes] |
rs74133641 | 0.97[AFR][1000 genomes] |
rs74133642 | 0.97[AFR][1000 genomes] |
rs74133644 | 0.94[AFR][1000 genomes] |
rs74133650 | 0.97[AFR][1000 genomes] |
rs74133655 | 0.97[AFR][1000 genomes] |
rs74134367 | 1.00[AMR][1000 genomes] |
rs74136503 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74136506 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74136508 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74136511 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74136514 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74136528 | 1.00[AMR][1000 genomes] |
rs74136531 | 0.91[AFR][1000 genomes] |
rs74136532 | 0.87[AFR][1000 genomes] |
rs74136533 | 1.00[AMR][1000 genomes] |
rs74136534 | 0.87[AFR][1000 genomes] |
rs74136536 | 0.87[AFR][1000 genomes] |
rs74136537 | 0.87[AFR][1000 genomes] |
rs74136538 | 0.87[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv469680 | chr1:196259846-196419016 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
2 | nsv482746 | chr1:196259846-196419016 | Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | nsv931415 | chr1:196270759-196744780 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
4 | nsv872953 | chr1:196286639-196411281 | Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | esv1826904 | chr1:196291977-196371432 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | n/a |
6 | nsv1009233 | chr1:196301712-196568874 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
7 | nsv872954 | chr1:196304863-196387809 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv872955 | chr1:196339655-196374780 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
9 | nsv548742 | chr1:196339655-196391866 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
10 | nsv872956 | chr1:196339655-196411281 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:196342000-196343600 | Enhancers | HUES48 Cell Line | embryonic stem cell |
2 | chr1:196342400-196343400 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
3 | chr1:196342400-196343600 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
4 | chr1:196342400-196343600 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
5 | chr1:196342600-196343400 | Enhancers | HUES64 Cell Line | embryonic stem cell |