Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr1:84852779-84853919	HCT-116	colon:	n/a	n/a

Variant related genes	Relation type
UOX	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10082140	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10082196	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874447	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs11164008	1.00[EUR][1000 genomes]
rs12057445	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063628	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063669	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1515142	1.00[EUR][1000 genomes]
rs1533373	1.00[EUR][1000 genomes]
rs17131643	1.00[EUR][1000 genomes]
rs172736	1.00[EUR][1000 genomes]
rs312398	1.00[EUR][1000 genomes]
rs6671641	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943947	1.00[EUR][1000 genomes]
rs7413066	1.00[EUR][1000 genomes]
rs7529017	1.00[EUR][1000 genomes]
rs7533636	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7546355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs784834	1.00[EUR][1000 genomes]
rs9804106	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830426	chr1:84704924-84856229	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84845600-84857200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:84845800-84854800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr1:84846400-84856000	Weak transcription	NHLF	lung
4	chr1:84851800-84853400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:84852000-84857200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:84852200-84853800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:84852400-84853400	Enhancers	HMEC	breast
8	chr1:84852400-84853600	Enhancers	NHEK	skin
9	chr1:84852600-84853600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:84852800-84853600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:84852800-84853600	Enhancers	HUVEC	blood vessel
12	chr1:84853000-84853400	Enhancers	Placenta	Placenta
13	chr1:84853000-84853600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr1:84853000-84853600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:84853200-84853600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:84853200-84855800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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